Burkholderia thailandensis MSMB121: BTI_3093
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Entry
BTI_3093 CDS
T02644
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
btd
Burkholderia thailandensis MSMB121
Pathway
btd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTI_3093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btd03019
]
BTI_3093
Enzymes [BR:
btd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BTI_3093
Messenger RNA biogenesis [BR:
btd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BTI_3093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DegT_DnrJ_EryC1
CMS1
Ric8
P-loop_SecA
Sacchrp_dh_NADP
CARD_2
Motif
Other DBs
NCBI-ProteinID:
AGK47523
LinkDB
All DBs
Position
1:3412139..3413590
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AA seq
483 aa
AA seq
DB search
MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA
KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIPGFEPDPNAKPEPIQRRGQRGGNGGNGGGGGAGSGGRGNRPPRAAG
QPQAQQGQPAARRDGGAQAKPAKPQQTRGGSGRPAGNGNSGNSNGGGAHANRNRPSRSGQ
RGH
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgcttctctcggactcgccgaaccgctcgtgcgggccgtcaacgagctgggc
tacacgcagcccacgccgatccaggctcaggccattcccgccgtgctgggcggcggcgat
ctcctcgccggcgcgcagacgggcaccggcaagacggccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgccgaaaaccgcagcgcgcgccgcgcggtgcgcgcgctc
atcctcacgccgacgcgcgagctcgccgcgcaggtcgaggaaagcgtgcgcgcgtacagc
aagtacgtgaagctgcgctcggccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgttgaagcgcggcgtcgacatcgtcgtcgcgacaccagggcgcctgctcgatcac
atgcagcagaagacgatcgacgtgtcgagcctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcattcacgacatcaagcgcgtgctcgcgaagctgccggcg
aagcgccagaacctgctgttctcggcgaccttctccgacgagatcaagtctcttgcggac
agcctgctcgattcgcccgcgttgatcgaagtcgcgcgccgcaacacgacggccgagacg
atcgcgcagaagatccacccggtcgatcgcgaccgcaagcgcgagctgctcacgcatctg
atccgcgagcacaactggttccaggtgctcgtgttcacgcgcacgaagcacggcgcgaac
cggctcgccgagcaactggcgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcgcgcacgcgcgcgctgtccgagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgacatcgccgcgcgcgggatcgacatcgatcaattgccgcatgtcgtcaac
ttcgatctgccgaacgtccccgaggactacgtgcaccggatcggccgcaccggccgcgcg
ggcgcgaacggcgaagccgtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgaacggctgatcaagcgcgagattccgcaggaagtgattccgggcttcgagccggat
ccgaacgcgaagccggagccgatccagcggcgcgggcagcgcggtggaaacggtggaaac
ggcggcggcggcggcgcgggcagcggcggtcgcggcaatcgcccgccgcgcgcggcgggc
cagccgcaggcgcagcagggtcagcccgccgcgcgacgcgacggcggcgcgcaggcgaag
cccgccaagccgcaacagacgcgcggcggcagcggccgcccggcgggcaacggcaattcc
ggcaattcgaacggcggcggcgcgcatgcgaaccgcaaccgtccatcgcgcagcggccag
cgcggccactga
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