Bombus terrestris (buff-tailed bumblebee): 100642601
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Entry
100642601 CDS
T04364
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bter
Bombus terrestris (buff-tailed bumblebee)
Pathway
bter03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bter00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100642601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bter03019
]
100642601
03041 Spliceosome [BR:
bter03041
]
100642601
Messenger RNA biogenesis [BR:
bter03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100642601
Spliceosome [BR:
bter03041
]
Complex B
Other components
Prp19-related factors
100642601
Complex C
100642601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
ARM_TT21_C
TPR_10
RPN7
DHR-2_Lobe_A
PPR
Microp_apicomplexa_6
4HB_MCP_1
Motif
Other DBs
NCBI-GeneID:
100642601
NCBI-ProteinID:
XP_020724289
UniProt:
A0A9B7D174
LinkDB
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Position
3:8991037..8995794
Genome browser
AA seq
839 aa
AA seq
DB search
MLERKDPEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKE
LPGSYKLWYNYLRQRVNQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
CYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEAAKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
RLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENGQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENRYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEEKFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNTSNSPSDIPADAMRLLDSKTQDNITTYKDSIKFVRG
TIEKDGKAESQVNNPDEIDIDIDDVDDTEADVEEDIPVEKQTIPSQVFGSLKTTDGEDD
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtaaagatccagaaggaaatctatatgtttttaatgaagaagatttacca
tacgaagaagaaattttgagaaatccttattctgtgaaacattggcaacgttatatagat
catttaaaaagtacaaaaagcagtaatttaaacattgtgtacgaacgagcgttaaaggaa
cttcctggaagctataagttatggtacaattatctacgtcaacgtgtcaaccaattgaaa
ggaaggtgtataacagatccgctttacgaagatgtaaataatgcatttgagcgtgctttg
gtttttatgcataaaatgcccagaatttggatggactattgcacattgatgacagaacaa
tgttatattacgcgtacccgtcaagtttttgatcgggcacttagagctctccctatcacg
caacatcatcgtatatggccattgtatattgaatttttaaaaaagcataatgtctatgaa
actgcagtcagagtttttagaaggtatcttaagctagctccagaagatacagaagagtat
atagaatacctgatatcaatcgggaggcttgacgaagctgctgtgaaacttgcacaaatt
gttaatcaggatgattttgtatcaaaacatggaaagtctaatcatcaattatggaatgaa
ttgtgtgatttaatatcaaagaatccttctaaaataaaatctcttaatgtagatgcaatt
attagaggcggtttaagacgttatactgatcagttaggccctctttggaattctttggcg
gattattatgttcgtagcggtttattcgaaagggcgagggatatttatgaagaagcaata
caaacagtgactactgttagagactttactcaagtgtttgatgcttatgcacaatttgaa
gaacttagtcttagcaaacgtatggaagaagctgcaaaaaatcctactgaagatgatgat
atagatctagaattgagattagcacgatttgaacatttaatggaaaggcgtttattactt
ctgaattctgtattgctcagacaaaatcctcataatgtacaagaatggcataaaagagtt
aggctttatgagggacaaccacacgagattattaatacatatacagaagctgtacagact
gtacaaccacaattagcagtaggtaaattgcatactttgtgggttgaatttggtaaattt
tatgaagaaaatggtcaaatagcagacgctagagtagttttcgagaaagcaactcatgtt
ccctatactaaagtcgatgatcttgcttctgtatggtgtgaatgggcagaaatggaaatt
aggcatggaaattataaagaagcgttaaaacttatgcatcgtgctactgctatgccattc
cgtaaggtagcttaccatgacgagacagaaacagttcaaatgagattgtataaatcttta
aaagtttggtctatgtatgccgatttagaagaaagttttgggactttcaagacatgcaaa
gctgtgtacgacaaaattatagatctaaaaatcgcaacgccgcaaatcattattaattat
ggactcttccttgaagaaaatagatattttgaagaagcttttagagcttatgaaaaaggt
attgcactcttcaaatggcctaacgtttacgatatatggaatacgtatcttacaaaattt
ttaaaacgttatggtggaacgaagttagaacgaacgcgagatttatttgaacagtgttta
gaattttgtccaccaaaatatgctaaagccttgtatttactgtatgcaaaattagaagag
gaacatggtttggctaggcatgcaatgtctgtatatgaacgagcaactaacgctgttctt
cctgaagaaaaatttgagatgtttaacatatatattaaaaaagcagcagacatatatggt
gtcccaaaaacgaggcagatatatgaaaaagctatcgaagtacttaatgaagataataca
agagaaatgtgtttacggttcgcagaaatggaaacgaaattaggagaagttgacagagct
cgggcaatatatgcgcactgcagtcaaatttgtgatccaagggtggcttcaaatttctgg
caaatatggaaagagtttgaagtgagacatggtaatgaagacactatgcgtgaaatgctt
cgaattaagcgtagtgtacaagctatgtacaacactcaagtgaatatgatgtctgcacaa
atgttaaataatacatcaaactcaccatctgatataccagcagatgcaatgcgtcttttg
gatagtaaaacgcaggataatattaccacatataaggacagtattaaatttgttcgtggt
acaatagaaaaagatggtaaagcagaatctcaagtaaacaatccagatgaaatagatatt
gatattgatgacgttgatgacactgaagcggatgtagaggaagacatacctgttgagaaa
caaactattccatcacaagtatttggtagtttaaagacaactgatggtgaagatgattaa
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