Bombus terrestris (buff-tailed bumblebee): 100643408
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Entry
100643408 CDS
T04364
Name
(RefSeq) uncharacterized protein LOC100643408 isoform X2
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
bter
Bombus terrestris (buff-tailed bumblebee)
Brite
KEGG Orthology (KO) [BR:
bter00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bter03041
]
100643408
Enzymes [BR:
bter01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100643408
Spliceosome [BR:
bter03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
100643408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
AAA_30
SPA
Motif
Other DBs
NCBI-GeneID:
100643408
NCBI-ProteinID:
XP_012166030
UniProt:
A0A9B2JNJ7
LinkDB
All DBs
Position
7:complement(22025793..22031196)
Genome browser
AA seq
1238 aa
AA seq
DB search
MSFMLQEKIEKMSHIIAHDIDKKPRTKDIKVQEDITFYQMGFSQKILDGLSLCGFQRPSP
IQLKAIPLGRCGFDLIVRAKSGTGKTLVFCIISLEMIDIDISSVQVLVLAPTREIAVQIA
QVFSSVACEIEGLKVEVFIGGTAIESDKKKLNNCHIAVGAPGRIRHLIDKEFLKVENVRL
FILDEADKLMETSFQKDINYIFSKLPLRKQVIASSATYPGDLEIFLQAYMCSPVLASPDN
NEPILVGLTQFITVVPSHPNVMKQVQIKVDELIKIFNKIPFKQSLVFSNYQSRAQSVCNK
ISAMGFKATFFAGNQDMNKRLEAINKLKTFKCKIMVTTDLTARGIDADNVNLVVNLDLPI
DAPTYLHRIGRAGRYGSYGLSITIVAENELETLQKLLMSIGGPNFYVLKLPFDYPDDIWN
TSNTKFEKLYAKSEKDENQFDIKPITTAINDLSMNTANIEVQNNIKSKVNETTDNINKEV
TENVEEVKNNIMDFSCLRNMPNLQNKIKVNSLFVPCINLIDESQCIKKKKKETTIMSYSV
SKPKIIHSFTLDAAINNNSSSWQKYNENVVFEVDLSDLQEDDLSNSNIDMIIEFTKYNFQ
SKNAEKSSFHHNYVNIDVHSEDTISRSTVHNEMQKQDLEQKIQKKSDVTADTLITISNNI
QNKTDVSILEELNSHLTEYMKSSNTFCDELCSNNEEILLKQAFIWKNKLDFEIKLLNNVM
EVMKESIQKFIYQKHVEMLKIFYRVQKKALLCVYPEIRNDDEVNDTYLYFRTSVDENVLE
LYKEIENFKSSHRKCGENFNAYFPYPVELDSYMPNLMISNTDREDYLNALRYLYSNPYPR
EHLLQIASFVTFIDEPKKYDLIQKLKSLNNSSVNELLTVIQSELSKKESNKNESKEQEDK
LLEHFDSTNRGENVINSKVDILHKTLDNIGNMTSQEENVSLSDNKCDKMSNNYSFDNSIS
TDLGLDDLFKIQKVARHENCNLTSSTSSIFSSESDTVKEHRLNGKVNTKNKFRRRKKIQK
QGDNTAKEQFIIRSSDSTDTYEKQYTSQTQSDLSSRSMTDRLNSSFVETNLSRKNSQNIQ
DIFNCQESYVDNEPQSSVSIPRISEHRKNNSCNFSPTPLTKNVSQRHLDNEVTTEKTNIC
NLHQQKSKNPVNSQYYAPFYNYMPNVPYNQVEDYMYMPGHLSRNIFSENIYHFPHSSSDN
LNEVEIDQFLSSLREETNRLHLELYKSEMLRNAMKNYN
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttatgttacaggagaaaatagagaaaatgtctcatattattgcacatgatatt
gacaaaaagccacggacaaaggatattaaagtacaagaagatattacattttatcaaatg
ggattttcccaaaaaattttggatggattatctctttgtggtttccaaagaccttcaccc
atacaattaaaagcaattcctttaggaagatgtggttttgacttaatagtacgtgccaaa
tcaggaactggtaaaactttagtgttttgtataatatcacttgaaatgattgatatagat
atatcgtctgtacaagtattagtattagcacctactagagaaattgctgtacaaattgca
caagttttttcatctgtagcttgtgaaatagaaggtttaaaagttgaagtatttatagga
ggaacagctatagaaagtgataaaaagaaattgaataattgtcacatagctgttggtgct
ccaggtagaattagacatttaattgataaagaattcttaaaagttgaaaatgttagatta
tttattcttgatgaagcagacaaattaatggaaaccagttttcagaaagacattaattat
atcttttcaaaattaccactaaggaaacaagttatagcatcaagtgccacttatccggga
gatttggaaatatttttacaggcatatatgtgctctcctgttttagcatctccagataac
aatgaaccaatacttgttggactcacgcagttcataacagttgttccttctcatccaaat
gttatgaaacaggttcaaataaaagtagacgaattaataaagatatttaacaaaattcca
ttcaaacaaagtttagttttttcgaattatcaatcaagagcccaatctgtgtgtaacaaa
attagtgctatgggttttaaagcaaccttttttgctggaaatcaagatatgaataaaaga
cttgaggccattaataaattaaagacttttaaatgtaaaataatggtaacaactgattta
actgcaagaggtatagatgcagataatgtaaatttagttgtaaaccttgatttacccata
gatgcaccaacatatttgcatagaataggaagagctggacgttatggatcttatggtctc
tctataacaatagttgcagaaaatgagttagaaacattacaaaaattattaatgtccatt
ggaggtccaaatttttatgtattgaaacttccttttgattatccagatgatatttggaat
acttctaatacaaaatttgagaaactttacgcaaaatctgaaaaagacgaaaatcaattt
gacattaaacctatcactacagctattaatgatttatctatgaatactgctaatatagaa
gtacagaataatataaagtcaaaagttaatgaaacaacagataatataaataaagaagtt
acagaaaatgtggaagaagtaaaaaataatataatggatttttcctgtttaagaaacatg
cctaatttacaaaataaaataaaagttaattctttgtttgtaccatgtattaatctgata
gatgaatctcaatgcattaaaaagaagaagaaagagactacaatcatgtcgtacagtgtg
tctaagcccaaaattatacatagttttacattggatgccgcaatcaataataattcttcc
agctggcagaaatacaatgaaaatgtggtatttgaagttgatttatcagatttacaagaa
gatgatttatcaaattctaatattgatatgattattgaattcacaaaatataattttcaa
agtaaaaatgcagaaaaatcttcttttcatcataattacgtgaatattgatgtacattct
gaagataccatttctagaagtactgtacataatgaaatgcagaaacaagacctagaacag
aaaattcagaaaaagagtgatgtaactgctgatactctgataactatctcaaataatatt
caaaataagacagatgtttccattttagaagaattgaattctcatctcacagaatatatg
aaaagttctaatacattttgtgatgaattatgttcaaacaacgaggaaatattattgaaa
caggcatttatttggaaaaacaaacttgattttgaaattaaattattaaataatgtaatg
gaagtcatgaaagaatctatacaaaagttcatatatcagaaacacgttgaaatgctgaaa
atattttatagagtacaaaagaaagctctcttatgtgtttatccagaaatacgaaatgac
gatgaagtaaatgatacttatttatattttagaacttctgtagacgaaaatgtactagaa
ctatataaagaaatagaaaatttcaaaagttcccatcggaaatgtggagaaaattttaat
gcatattttccatatcctgttgaattagattcatatatgccaaatcttatgatctccaac
acagacagagaagattatctcaatgcattacgatatttatattcaaatccttatcctagg
gaacatttattgcaaatagcaagttttgtgacattcattgatgagcctaaaaagtatgat
ttaatacaaaaattaaaaagtttaaacaactcttcagttaatgaattgttaacagtaata
caaagtgaattatctaagaaggaatcaaataaaaatgaaagtaaagaacaggaagacaaa
ttattagaacattttgatagtacaaatcgaggtgaaaacgttattaattcaaaggttgat
attttacataagacactagataatattggaaatatgactagtcaagaagagaacgtctct
ctaagtgataataaatgcgataaaatgagtaataactatagttttgacaattctatatca
actgatttaggtttggatgatctttttaaaatacaaaaagttgcacgtcatgaaaattgt
aacttgactagtagtacatcaagtatattttctagtgaaagtgataccgttaaggaacat
agattgaatggaaaagtaaatacgaaaaataaatttcgtagacggaaaaagattcagaaa
caaggagataatactgctaaagaacaatttattatcagatcatctgatagtactgatacg
tatgaaaaacaatatacgtcacaaacgcaatcagatttgtcatctagatcaatgacagat
cggttaaattcgtcttttgtagaaacaaatttaagcagaaaaaatagtcagaatattcaa
gatatatttaattgtcaagagtcttacgtagataatgaaccacaaagttctgtttctatt
cctagaattagtgaacatcgaaagaataattcatgtaatttttctcctacacctttaaca
aaaaatgtttcacagagacatttagataatgaagttacaactgagaaaaccaatatttgt
aatttacatcaacaaaaatcaaagaatcctgtaaattcacaatattacgctcctttttat
aattatatgcctaatgttccttataatcaagtagaagattatatgtatatgccaggacat
ttgtccaggaatatattttcagagaatatatatcattttcctcattcatcaagtgataac
cttaatgaagttgaaattgaccaatttttatcatcattaagagaggaaacaaatcgattg
catttagaactttataaatcagaaatgctccgtaatgcaatgaaaaattataattag
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