Bombus terrestris (buff-tailed bumblebee): 100649253
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Entry
100649253 CDS
T04364
Name
(RefSeq) collagen alpha-1(I) chain
KO
K19719
collagen type II alpha
Organism
bter
Bombus terrestris (buff-tailed bumblebee)
Pathway
bter04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
bter00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100649253
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bter00536
]
100649253
Glycosaminoglycan binding proteins [BR:
bter00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100649253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
100649253
NCBI-ProteinID:
XP_012176731
UniProt:
A0A9B2K0X9
LinkDB
All DBs
Position
4:17405172..17416892
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AA seq
1508 aa
AA seq
DB search
MGPEALRLAAAFAVIQLLLPQVHSIRTKLRKQRSKPLQAQQAANGDYDYDYYEGYDDYDD
RNETTTTTAPSPPVTSSVNTASRGELPTETLQTFYRPGLSTDVPTQATIRTFSQVGILPN
EVQTTPEQNHASPTEIVPGESNVISAVAVPGPRGEPGRPGDMGRPGDAGFPGHPGSPGIP
GPPGPPGPIPDVSMYYQQLALSQANQDKGPTGAAAPLYGPEAYLQMQTGPIGPRGPSGPP
GPPGPQGFQGVRGEPGEPGTLGPPGAPGPRGLAGLPGKDGNTGEDGEPGPPGSVGPVGPR
GLPGMPGLPGVKGHRGFPGLDGAKGEQGVSGEKGSMGVPGPMGHVGPMGPAGPRGERGRE
GPPGPPGIRGVDGIAGPPGQPGTVGKPGSPGFPGSPGVKGDQGAQGPKGSQGIQGPRGET
GRPGQPGESGPQGPQGKDGIPGEKGSTGATGLVGAPGFPGARGQPGIPGNPGVPGAKGMP
GLSGERGFKGDSGAKGDSGSPGPRGLPGPPGNEGKRGKRGMRGPIGTSGPAGERGAPGAP
GLPGPDGPIGPKGQSGDRGPIGPMGLRGANGDPGRPGSPGLQGTRGLMGRPGAPGKPGNP
GDRGIQGADGKPGEQGPAGLQGLPGPIGLPGEKGYPGEPGKAGEPGNPGPPGPRGDTGKE
GAPGPQGSPGPSGVDGERGPPGSPGPRGFQGFPGVTGNPGTPGKDGESGVQGPPGPPGIP
GNRGERGFPGERGTPGGPGLTGPRGEPGAQGLDGPPGLPGAKGDRGISGPPGLVGLPGLR
GATGESGQKGERGSSGPPGPEGPSGRIGERGPQGQIGSPGPPGEPAERGDPGLPGPPGEV
GAPGNPGERGPQGLQGLQGFPGPQGLIGLPGLKGDRGYPGLKGDQGNPGLPGSPGETGPQ
GLVGLTGAKGVRGEPGARGEPGIMGPPGVPGIVGAMGPPGAIGPSGPPGLPGSKGNIGET
GRAGNPGPIGNPGSPGADGNKGESGSQGPPGTPGPQGPQGSPGERGLPGLPGPSGPIGAR
GIRGAPGESGVPGKPGPEGPPGPPGQVGPIGPHGPTGEIGAEGPSGKPGPPGIAGRPGDK
GPPGAVGQTGLPGSPGLPGPPGQAGAPGSTGERGPKGETGPQGVEGQQGPRGKPGPIGLE
GPKGDRGEEGQKGAKGHRGFTGLQGLPGPTGLPGEKGIPGLPGLPGKDGESGPRGSPGRD
GSPGPIGLTGNPGPKGPSGEEGRHGPPGPPGPPGPPGPPGELGLGYDAASLAALLGQGQT
KGPDPLVGDEPPRMFSQDMTEEERKELILKAYKQLKSSFQKFVKPDGGKSSPAKTCRDLY
TAYPDKLSGEYWIDPNEGDTRDAILVYCDAKKRATCLLPNPVRSPEINYITDQPETWLSE
IENGMKITYKADSNQIGFLQLLSKHAYQNIIYHCKNSIGYFDSERKTYRKGMKFLTWNDV
ELTPRGNQRLRYEMITDECRTYNGQWGKTVISYETDKPVRLPIIDVALRDIGKPDQSFSI
EIGTVCYE
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atggggccggaggcccttcggttagccgcggcgttcgccgttatccaacttcttttgcca
caggttcattccatacggaccaaactcaggaaacaacggtccaagccgctgcaagctcaa
caagccgcgaatggtgattacgattacgactattacgagggttacgatgactacgatgat
agaaatgaaactacaactacaactgcgccatcaccacctgttacatccagcgtcaatact
gcaagcaggggtgaattaccgacagagacattgcaaactttctacagacctggactgtct
acagatgtaccaacgcaagcgacaattcgaactttcagtcaagtcggtatattaccaaac
gaagtgcaaacaacaccagaacaaaatcatgcatcaccgacagagattgttcctggtgaa
agtaacgtgattagcgcggtcgctgttcctggacccaggggcgagcctggtcgacctgga
gatatgggtcgtccgggagatgctggatttccaggacaccctggatctccgggaattcca
ggacctccggggccaccaggacctatacctgacgtatcaatgtattatcagcaattagct
ttatctcaagcaaatcaagataaaggaccgacgggagcagcagcacctttgtatggtcca
gaagcctatttacaaatgcaaactggtcctattggaccgcgtggtccatcaggtccacct
ggaccacctggaccacagggttttcaaggagtacgaggagaacctggtgaacctggaact
ttgggtcctccaggagcgccaggtcccagaggattagctggtttaccgggaaaggatggt
aataccggtgaagatggagaacctggtcctccaggatcggttggtccagtcggaccaaga
ggtctaccagggatgcctggtcttcctggtgtaaaaggacaccgaggttttccggggtta
gatggtgcaaaaggagaacaaggtgtatctggtgagaaaggatccatgggcgtacctgga
ccgatgggacatgtaggcccgatgggccctgcaggtccacgtggtgaaagaggtagagaa
ggtcctcctggacctccaggaattagaggggtggatggtattgctgggccccctggtcag
cctggtacggtaggtaagccaggttctcctggatttccaggtagtccaggtgtaaaagga
gatcaaggagcacaaggaccaaaaggaagccaaggcatacaaggccctcgaggtgaaact
ggtcgtcctggtcaacctggtgaatcaggaccacagggaccccagggaaaagatggaata
cctggagaaaagggaagtacaggtgcaactggtttagttggtgctccaggtttccctgga
gctcgcggacaacctgggatacctggcaatcctggtgttccaggagcgaaaggcatgcct
ggactttcgggtgaaagaggatttaaaggtgatagtggagctaaaggtgattcgggaagt
ccagggccacgtggtttgcctggtcctcctgggaacgagggtaaacgaggaaaaagggga
atgcgcggaccaattggtacatccggtcctgccggagaacgtggagcaccaggcgcaccg
ggtcttccgggacctgatggccccataggacccaaaggtcagtctggagatcgtggacca
attggaccaatggggctcagaggagctaacggagatcctggtcgcccaggatctcccggt
ttacagggtacacgtggtttaatgggtcgccctggtgctcccggaaaaccaggaaaccca
ggagaccgaggaattcaaggtgctgatggaaaaccaggtgaacaaggtccagctggatta
caaggtttacctggtccaataggtctcccaggagaaaagggatatccgggtgaaccagga
aaagctggtgagccaggaaatcctggaccacctggtcctagaggtgatacgggaaaggaa
ggagcaccaggacctcaaggttcacctggaccatcaggagtagatggtgaacggggacct
ccaggatctccaggtcctagaggttttcagggttttccaggcgttactggtaatccagga
acaccaggaaaagatggagaatcaggtgttcaaggaccacctggtccaccaggtatacct
ggaaatagaggtgaacgaggatttcctggtgaaagaggtacaccaggaggaccaggatta
acaggaccaagaggagaaccaggcgcacaaggattagatggacctcccggattacctgga
gcaaaaggagatcgaggaatttcaggtccacctggattggtaggattgcctggcttacga
ggagctacgggagagtcaggtcagaaaggagaaagaggatctagtggaccgcctggccct
gaaggaccttcaggacggattggagagcgtggaccacaaggtcaaattggctcaccggga
ccgccaggtgaaccagcagaacgaggcgatcctggattacctgggcctccaggagaggta
ggtgctcctggaaatccaggagaaagaggaccccaaggattacaaggactgcaaggcttc
ccaggaccacaaggactcattggtttaccaggattaaagggtgatcgtggttatccaggt
ttaaaaggagatcaaggaaatcctggcctacctggtagcccaggtgaaactggaccacaa
ggtctagttggtttgacgggagctaaaggagtacgaggagaaccaggcgctagaggagag
cctggtattatgggaccaccaggagtaccaggaatcgttggtgcaatgggccctccaggg
gcaataggaccatcaggaccacctgggttaccaggtagtaaaggtaatattggagaaaca
ggacgagccggaaatcctggacctattgggaatccaggttcacctggtgcagatggaaat
aaaggcgagagtggttctcaaggaccaccaggtactcctggtcctcaaggtcctcaaggc
tctcctggcgaaagaggattacctggtttaccaggtccgtctggaccaataggcgctaga
ggaatacgaggagcacctggtgaatctggtgtacctgggaaacctggaccagaaggtcca
cctgggcctcctggacaagttggaccaattggaccacatggaccaacaggagaaattgga
gcagaagggcccagtggtaaacctggaccacctggaatagcaggtcgtcctggagataaa
ggaccaccgggagcggtaggacaaacgggattgcccggctctcctggtttacccggacca
cctggtcaagcaggtgctccaggatcaactggagaaagaggaccaaagggagaaacagga
ccacaaggtgtagaaggacagcaaggacctagaggaaaaccaggacctataggattggaa
ggtcctaaaggtgatcgcggagaagaaggccagaagggtgcgaaaggccatcgaggattt
actggtttacaaggtttacccgggcctactggtctaccaggggaaaaaggaatacctgga
cttcctgggctacctggaaaagatggcgaatctggacccagaggtagtcctggacgagat
ggcagccctgggccaattggattaactggcaatccaggaccaaaaggtccttcaggtgaa
gaaggtcgccatggaccaccaggtcctcctggtcctccagggcctccaggtccacctggt
gaacttggattaggatatgatgctgcttctttagctgcacttttaggacaaggtcaaact
aaaggaccagatccattagttggtgatgaaccacctagaatgtttagtcaagacatgaca
gaagaagaaaggaaagaactcattttgaaagcatataaacaattgaaatcatcattccag
aaatttgtaaaaccagatggtggaaaaagttcaccagccaaaacttgcagggacctttat
actgcttatccagataaactttctggagaatattggattgatcctaatgaaggtgataca
agagatgcaattttagtgtattgtgatgctaagaaacgtgcaacatgcttattacctaat
cctgtacgttccccagaaattaactatattactgatcaaccagaaacttggttaagcgaa
atagaaaatggaatgaagattacatataaagcagatagtaatcaaattggctttttgcaa
cttctatcaaaacatgcataccaaaatataatatatcactgtaaaaatagcataggctat
tttgattctgagcgaaagacgtatagaaaaggtatgaaatttttaacctggaatgatgta
gaattaacaccacgtggaaatcaacgtctaagatatgaaatgataactgatgaatgtaga
acatataatggacaatggggtaaaacagtaatttcatatgaaactgataaacctgtaaga
ctacctataatagatgtggccttacgagatattggaaaaccagatcaaagcttttctatt
gaaatcggtactgtttgttatgaataa
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integrated database retrieval system
