Bombus terrestris (buff-tailed bumblebee): 100649852
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Entry
100649852 CDS
T04364
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bter
Bombus terrestris (buff-tailed bumblebee)
Brite
KEGG Orthology (KO) [BR:
bter00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bter04147
]
100649852
00535 Proteoglycans [BR:
bter00535
]
100649852
00536 Glycosaminoglycan binding proteins [BR:
bter00536
]
100649852
Exosome [BR:
bter04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100649852
Proteoglycans [BR:
bter00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100649852
Glycosaminoglycan binding proteins [BR:
bter00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100649852
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
RH_dom
Motif
Other DBs
NCBI-GeneID:
100649852
NCBI-ProteinID:
XP_048266010
UniProt:
A0A9C6VZ88
LinkDB
All DBs
Position
11:complement(4204392..4550096)
Genome browser
AA seq
1178 aa
AA seq
DB search
MRPRLQWLIFVLFCVTRVNADFFNEKKELEYDLLQASVALTDDNNLYIDDGLDGFPSFGF
RPGSEVKQPYRLYLPEKLPAEFTLVATFKPTSFRTSYLFAVLNPFETVVQLGIRISDGPG
TNQNVSLVYTNSDLHSHSEEVAKFTVPKLTKKWSKIVIRVSTTDVTLYLNCHEMAKQRVT
RIPLELMFDTASTLYIAQAGPHIQEKYDGLLQSLKLYSGHPADLVRCTADFNFNPDEDLG
SGDINNDLIDGLEDVDTNVPDIGRDDDEDRSEESNPPPFITPPPPNPDYKGPKGEKGDKG
DKGESVRGPPGPPGPPGQDEGPPGKKGEPGTCTCNATALMASFTMPKMIQGPKGEQGVPG
QEGKQGQMGLTGAAGPPGERGLEGPQGPKGDKGDVGIAGPEGPQGQKGEPGRDGIPGEKG
AQGPPGPPGKGEFSGYDPSWKPRGIYRTEGITMRPGLPGQKGEAGLPGSPGPKGETGIAG
AKGYKGEPGHKGVKGDHGKEGPRGIQGFKGEPGAPGAPGLPGAPGENGRPAEKGDKGDTG
PEGKPGPAGAPGPPGLPGLSGSGGVNVGEAMLREKGDKGESGARGYKGDKGTKGEKGDKG
DSGPAGIPGVNGIQGPQGNKGEPGKDGVPGAPGVVGAKGEKGERGPPGATAIASSGDYIT
IKGEKGAEGKRGRRGRPGPPGPVGPPGKTGAMGEIGLPGWANSMKGRPGTPGLPGPVGPV
GPKGEKGEPGTPSPYGVSVGIKGDKGDDGFPGIPGQPGRDGQRGPPGPPGPPGPPSQGNY
IPVPGPPGPPGPPGPPGLSLIGQKGEPGIGRSHIFGERDYYGVRQVPKNIKDFKHDMFFG
TLQGPRTSLDELKALRELKQLKELKEHLGAATTATRGPLESTTKIVPGAVTFQNTEAMTK
MSAVSPVGTLAYIIDEQALLVRVNNGWQYIALGSLLPITTPAPPTTSPPPVNPPFEASNL
INQIPVKADGTGWYPRMLRMAALNEPFTGDMHGVRGADYACYRQAKRAGLRGTFRAFLSS
RVQNVDSIVRLGDRDLPIVNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNILTDFA
WPEKVAWHGSHKLGDRAMDTYCDAWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNKFALLC
IEVTSETTRRRRSVEVSEDEDEMSENDYKEYLDSLLEN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctagattgcagtggttgatattcgtcctgttctgtgtgacgcgcgtcaacgcg
gactttttcaacgagaaaaaagagctggaatatgatttacttcaagcttccgtggcatta
acagacgacaataatttgtacatcgacgatggtctcgacggatttccaagttttggcttc
cgacctggctccgaagttaaacagccgtatcgattatatttgccggaaaaattgccagca
gagttcactttggtggcaacttttaagccgacgtcatttagaaccagttatctcttcgcc
gttctaaatcccttcgaaactgttgtgcaattaggcatccggatatccgatggtccagga
acaaaccagaatgtctcactggtctacaccaattctgatttgcattcgcattcggaagag
gtggcgaaattcacggtgccgaagttgacaaagaaatggtcgaagatcgtaatcagagta
tcgacaactgatgtcaccttatatctaaactgtcacgaaatggccaagcaacgagtaacg
aggattcctctggagttgatgttcgacacagccagcacgttgtacatcgctcaagctggg
cctcatattcaagaaaaatacgatggtctactgcaatccttgaagctctattccggacat
ccagcggatttggtaagatgcacggccgacttcaacttcaacccagacgaggatctcggc
tcaggcgatatcaataacgacttgattgacggtttggaagacgttgacactaatgtgcca
gacatcggacgagacgatgacgaagacagaagcgaggaaagcaatccaccgccattcatc
acaccccctcctcccaatccggactacaaagggccgaagggtgagaaaggtgataaagga
gacaaaggagagagcgttaggggacctccaggtccacctggaccacctggtcaagacgag
ggtccaccagggaagaaaggagaacccggcacgtgcacctgcaatgcaacagccctgatg
gcatcctttacgatgccaaagatgatccaaggaccgaaaggagaacaaggagtgccgggg
caagaggggaaacaaggccaaatggggctgacgggtgcagctggaccacctggagagaga
ggactggaaggaccacagggtcctaagggtgacaaaggagacgtgggaatagcaggaccg
gaaggtcctcaaggacagaaaggggaacctggtcgtgatggaatacccggagagaagggc
gctcaaggacctccaggaccgccaggaaagggtgaattttctggatatgaccccagttgg
aaacctcgaggcatttataggacggaaggcatcaccatgagaccaggactgccaggacag
aaaggcgaagccggacttccgggaagcccaggaccgaaaggagagacaggaatcgccggt
gccaaaggatacaagggcgagccagggcacaagggtgtgaaaggcgatcatggaaaagaa
ggtccacgaggaattcaaggattcaagggtgaacctggtgctccgggagcaccggggctt
cctggcgcaccaggtgagaatggaagaccagcagagaaaggtgacaaaggagacacagga
ccagaagggaaaccaggccctgcaggtgcacctggaccaccaggattgcctggattgagc
ggctctggcggagtaaacgttggagaagcgatgttaagggaaaagggcgataagggcgag
agtggtgcacgaggatacaaaggagataagggcaccaaaggcgagaagggagacaaaggt
gattctggaccagccggaattcctggtgtgaatggtatccaaggaccgcaaggcaacaaa
ggcgagccagggaaggacggagttcccggagcaccgggagtcgtcggtgcaaagggcgaa
aaaggtgagagaggtccgccaggagctacagctatagcgagctctggagactacatcact
atcaaaggtgaaaaaggagcagaaggcaagagaggtagaagagggcgtcctggaccacca
ggaccggtcggcccacctggaaagacgggagcgatgggagaaattgggttacctggatgg
gcgaactccatgaaaggtcgtcctggaactcccggacttcctggacctgttggaccagtg
gggcccaagggagaaaaaggagaacccggtacaccgagcccttacggagtctctgtcggc
atcaaaggcgataagggagacgatggtttccctggaattcctggacaacctggaagagac
ggtcaaagaggacctccagggccacccggaccacctgggccaccgtctcaaggaaactat
attccagttccgggtcccccggggcctcctgggccaccaggaccacctggactatctttg
attggacagaaaggagaaccaggaattggtagaagtcacatctttggcgaaagagactat
tacggagttagacaggttccaaagaatataaaagattttaaacacgatatgttctttggc
acgctgcaaggacctagaactagtctagacgaattgaaggctctgcgagaactaaagcaa
ctgaaggaacttaaagaacatttaggtgctgcaaccaccgcaactagaggtcccttagaa
agtaccacgaagatcgtaccaggagctgtgactttccaaaataccgaagctatgaccaaa
atgtctgccgtgagcccagttggaacattagcttatatcattgacgaacaagctctgctc
gttagagtgaacaatggctggcaatacatcgcattgggttcgcttctaccaataactaca
ccagcaccaccaaccacgtcaccgcctccggtgaatccacctttcgaggcttccaacctg
atcaaccagatacccgtaaaagcagacggaacagggtggtatccacggatgttacgaatg
gctgctttgaacgagccatttacgggagacatgcacggtgtacgtggagctgactacgct
tgttatcgacaagcgaagcgagctggtttgaggggtacgttccgagcattcctcagctcc
agagttcaaaatgttgacagcatcgtgagactcggggaccgtgatcttcctatcgttaac
ataaagggcgatgtacttttcaactcgtggaaagagatgttcaacggaaacggggcctac
ttctcgcaaaatccaaggatttacagtttcaatggcaaaaatatcctcaccgattttgcg
tggccagaaaaggtggcatggcacggatcgcacaaattaggagaccgggcaatggacacg
tattgcgacgcctggcattcaagtagttcggatcgttacggattaggatcaccgttaact
gggggacgcctcttggagcaagttcgttattcctgcgacaacaagtttgcgctgctctgt
atagaagtaaccagcgagaccacaagaaggaggagaagcgtcgaagtttcggaggatgag
gacgaaatgtcggagaacgattataaggagtacttggattctctgttggaaaactaa
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