Bombus terrestris (buff-tailed bumblebee): 100649909
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Entry
100649909 CDS
T04364
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
bter
Bombus terrestris (buff-tailed bumblebee)
Pathway
bter03008
Ribosome biogenesis in eukaryotes
bter03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bter00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100649909
09123 Folding, sorting and degradation
03018 RNA degradation
100649909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bter03019
]
100649909
03009 Ribosome biogenesis [BR:
bter03009
]
100649909
03016 Transfer RNA biogenesis [BR:
bter03016
]
100649909
03036 Chromosome and associated proteins [BR:
bter03036
]
100649909
Messenger RNA biogenesis [BR:
bter03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100649909
mRNA degradation factors
5'-3' decay
5' exonucleases
100649909
Ribosome biogenesis [BR:
bter03009
]
Eukaryotic type
Pre-60S particles
RNases
100649909
Transfer RNA biogenesis [BR:
bter03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100649909
Chromosome and associated proteins [BR:
bter03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100649909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
XRN1_D2_D3
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
100649909
NCBI-ProteinID:
XP_003403090
UniProt:
A0A9B0C348
LinkDB
All DBs
Position
16:complement(4674998..4682340)
Genome browser
AA seq
1626 aa
AA seq
DB search
MGIPKFFRYISERYPCLTEKLKDYQIPEFDNLYLDVNGIIHDCSHPDDMDITFRISEETI
FKNIFHYIEVLFRMIQPQKLFFIAVDGVAPRAKINQQRSRRFKNAKDAKIQEDKAKIKGT
TLPKEKRFDSNCITPGTVFMSKLDEQLKYFITYKISTDKLWQKCKVIFSGSQVPGEGEHK
IMDYIRYMKTQANYDVNTKHCLYGLDADLIMLGLCTHEVHFTLLREEVTFGKKQKKVCLT
PEETKFCLFHLSLLREYINHEFSSLKEKLPFPYNLENIIDDWILMGFLIGNDFIPHLPNL
HIVHGALSVLYQVYMDVMPTLDGYINETGTLRLDRFEKFMERLSRFDTLQFSEYYADLKY
LESKTGRTETENSNDKRSGSTEETRSPRKMQDKEFDALLRSAADMSTGKYDDDEYGDDKS
DCEMYTMEFVQCKKDYYINKLKYENIDEDFLRSQAEGYVRAIQWNLNYYYNGCCSWSWYY
PHHYAPYISDIKDFKDLKLEFDLGEPFLPFEQLLAVLPSYSKDLLPPAFQTLLTEDQSPI
IKYYPTNFETDLNGKEQEWEAVVLIPFINEKDIVDAMAPHYPQITPEERARNRHGPMCLF
TYTEENLGAYKAPEYFPDIINHAKVELINREDIAVPREKLVRGLSPGVKLDVYYPGFSTL
QYIKHTASLEKAKVKVFQRHSRRESMILHIKPQSNIDLTTIGSKLLGKTVYVNWPHLKEG
LVIGVSESSRKMNSVNQFDNTNETEWNVWKKRVTEMYKDHLGVDIGDTKFLVHVRLLVGK
KYIFNAQGKVNIEKHWTEMPTCYAYQTIVKDITTYCNNVQLYKTVSDIFEPGTVCFMLAH
PYYGAMGKVHESAVCKNSGRIKVSVTTMREPSFEAIKQIQADLQTQYMHGSVASQRLGIS
SLLLSRITGSIFVKQSSNELQQDDVRYNIGFNLKFNKKNAEIPGYTRKVELGQWYYSPKV
LDLIHSYMLRCPTLFERLAQNPTTCIFQEDDLFTKGSEELTDTVAWLKDQLHGIESRACG
REIIENTIMEKLEEIVDAYLESPNSIGKIVDMQVQPYLLYTPTLRIKNLPPDPKTQTQLL
DRICSIKDNFTVPLGYKGTIIGIQKMENTLDTMYDVLFDKPIIGGVSINGSSEFRAYRLS
VFDFINISYGQRIEQGKGTQMNIESTEQWKNIMAINQNAQSRTNASNVIYRNEKHLMVEA
PMSPKSWSTQKNIEEIPKNQLPYKFKQYNAQNTVNVRKSHKPIAKSVQLSQNVPKKLMAE
PTSEFQAIWNELHKKQELIKAVPQAENSLQDPSAFLKAVLKISDGNSQEPVQPRVSKTTK
SLNNSQEEKKALDTPPLVQQMFDHARQNDKAPTWYCSQLLNYYQLSGVGMPRYSYFGVGD
SNLIQAHVLLPDKRIFVGDPCANHEQAAGSAAKKVYIELKLANLLPNMKIPLPPPQHWYS
NPQNSNWPQNIRPPPVPYYPPDPKLLQLFPDWVQKDHHRVPGLQEQPKHNKHQYKHHIHP
KVERTHNQKEPKAETKKCTAFVPLQAQKKSRHITAKQAVSKDSANQSAKDKPQPTVQQKG
KESPAKTIKVEAVSTTFEKQKPVQNSSHQVQNTQILIKPKKSRVAAKFCISTQIEEANHS
KNQNSD
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atgggtataccgaagttctttcgatatataagcgaaagatatccttgtcttactgaaaaa
ttgaaggactatcaaatacctgaatttgataatttatatttagatgtgaatggtattata
catgattgctcacatccggatgacatggatattacattccgtatttcagaagagaccata
ttcaaaaatatatttcattacatagaagtattgtttcgtatgatccagcctcagaagtta
ttttttatagcagttgatggtgtggcaccacgtgcgaaaattaatcaacaaagaagcaga
cgattcaagaatgcgaaagatgcaaagattcaggaagataaagcaaagattaagggtacg
actttacccaaagaaaaaagatttgattctaactgtataactccaggaacggtttttatg
tccaaacttgatgaacaattaaagtattttattacatataagatatcaactgacaaactt
tggcaaaagtgtaaagtcatattcagtgggtcccaggttcctggagaaggagaacacaaa
ataatggactatatacgttatatgaaaacacaagcaaattatgatgtaaatacaaaacat
tgtttatatggtttagatgcagatttaataatgttaggtttatgtacacatgaagtacat
tttacattactgagagaagaagtgacatttggtaaaaaacaaaaaaaagtttgtttaaca
ccagaagagacaaaattttgtctgtttcatttatctctgttaagagagtatataaatcac
gaattttcctcattaaaggaaaaattgccttttccatataatttggaaaatataatcgac
gactggattttaatgggatttcttataggaaatgattttataccacatctgccaaattta
catattgtacacggcgcattatctgtattgtatcaagtatatatggatgtaatgcctaca
ttagatggttacataaatgaaacaggaacgttacgattagatagatttgaaaaatttatg
gaaagacttagtcgttttgacacattgcaattttcggagtattacgcagatctaaagtat
ctcgaaagtaagacagggagaactgaaactgagaactccaatgacaaaaggtcaggaagc
actgaagagactcgttctccaaggaaaatgcaagataaggaattcgatgctttacttaga
tctgccgcggatatgtcaacaggaaagtatgatgatgatgaatatggtgatgataaatca
gattgtgaaatgtacactatggaattcgttcaatgcaaaaaggattattatataaataaa
ctaaaatacgaaaatatagacgaagattttttacgttcacaagctgagggttacgttaga
gcaattcaatggaatttaaattattactataacggttgttgcagctggtcgtggtattat
ccacaccattatgcaccttatatttcggatataaaagattttaaagacttgaaattggaa
tttgatttaggggaaccatttttaccgttcgaacaattattagctgtgttgccatcttat
agtaaagacttattaccgccagcattccaaacattgttaaccgaggatcaatctcctata
attaaatattatccgacgaattttgagacagatttaaatggcaaggagcaggaatgggaa
gctgtagtactcattccattcataaatgagaaagatatagtagacgcaatggcgcctcat
tatccacaaataactccggaagaacgggcaagaaacaggcatggtccaatgtgtttgttc
acttatacagaagaaaatttaggtgcttataaggcacctgaatattttcctgacattatt
aatcacgcaaaagttgaactaattaatcgtgaggacattgctgtacctcgggaaaaatta
gttcggggcttgtctcctggtgtaaagctggatgtatattatcctggtttttctactcta
caatatataaaacatactgcgagtttagaaaaagccaaagtaaaggtattccagagacat
tcacgccgagaaagtatgattctccacataaaaccacagtccaatattgacttaacaacc
ataggttcgaaattattaggtaaaacagtgtacgtgaattggcctcacttgaaggaaggt
ttggtaatcggtgtttctgaatcgagcaggaagatgaattcggttaatcagtttgacaac
accaatgaaacagaatggaatgtgtggaagaaacgtgtaacagaaatgtataaggaccat
ctcggagtggatatcggagatacgaagtttttagttcatgtacgactattggtaggcaaa
aagtacatctttaacgctcaagggaaggtgaacatcgagaagcactggaccgaaatgcca
acttgttatgcttatcagactatagtaaaagatatcacaacctattgtaataatgtacaa
ttatacaagactgtcagtgatatctttgaaccaggaactgtatgtttcatgttggctcat
ccatattatggagcaatgggaaaagtacatgaatccgcggtctgtaagaattcgggcaga
ataaaagtatctgtaacaacgatgcgagagccgtcgtttgaagcgatcaaacagattcaa
gcagatctccaaacccaatatatgcacggcagcgtagcttcgcagaggttgggtataagc
tctctgcttttaagtagaattaccggctcgattttcgtaaaacaatcctcaaatgaactt
cagcaagatgatgttagatataatatcggatttaatttaaagttcaacaaaaagaacgcg
gagatacctggttacactagaaaagtagaacttggtcaatggtattacagtcctaaagtt
ctcgacttaatccatagctacatgttgaggtgccccactttgtttgagcgattagctcaa
aatccaaccacatgtatttttcaagaagatgatctatttactaaaggttctgaagaacta
actgatacagtggcatggttgaaagatcaacttcatggaatagaaagtcgtgcctgtggc
agggaaattatcgagaatactataatggaaaaacttgaagaaatagtggacgcgtatctc
gagtcaccaaatagcattggaaaaattgtggacatgcaagttcaaccatatttgctttat
acacctactttgcgtataaaaaaccttccacctgatccaaaaacgcagactcagctattg
gacagaatttgcagtattaaagataatttcacagtacctcttggatacaagggaactata
attggaatacaaaagatggaaaatacgttggacactatgtacgatgttttgttcgacaaa
ccaatcataggtggagttagcataaatggatcttctgaattccgcgcgtatcgtttatca
gtctttgattttataaatatcagttatgggcagagaatagagcagggtaaaggaacgcaa
atgaatatagaatccacagagcaatggaagaacatcatggctatcaatcagaacgctcaa
tcgcgcacaaatgccagcaatgttatatataggaacgaaaagcatttaatggtggaagca
ccaatgtcaccaaagtcatggtctacacaaaagaatatagaggaaatcccgaagaatcag
ctgccttataaattcaagcagtataacgcgcagaacactgtgaacgttcggaaatcgcat
aaaccaatagcaaaaagcgtacagctttctcaaaacgtaccgaagaagctgatggcagaa
ccgacatccgagttccaagcaatatggaacgaattgcataaaaaacaggagctaatcaaa
gctgtgccacaagccgaaaattcactacaagatcctagtgctttcttaaaagcagtatta
aaaatttccgatggaaactctcaagaacctgtccaacctagagtatctaaaacaactaaa
agtttaaataactcacaagaagaaaagaaggcattggacacgccacctttagtgcaacaa
atgtttgatcatgctcgacagaacgacaaggcgccaacttggtactgctcacaattactg
aattactatcaactcagtggagtgggaatgcctcgatatagttattttggtgttggagat
agtaatttaatccaagcacatgttcttttaccagataaaagaatatttgttggagatcct
tgtgcgaatcacgaacaagcagcaggaagtgctgcaaagaaagtttatatagaactaaaa
ttagctaatttattgccaaatatgaagatacctttaccgcccccgcaacattggtactct
aatccccagaacagtaattggccacagaatataaggccaccaccagtaccatattaccct
ccagaccctaaacttcttcaacttttccctgattgggttcaaaaggaccatcatcgcgta
cctggacttcaagaacagcccaagcataataaacatcagtataagcatcatattcatcca
aaagtagaacgaactcataatcagaaggaaccaaaggcagagacaaagaagtgtacagct
ttcgtacccttacaagcacaaaagaaaagcagacacatcacagccaaacaggctgtaagc
aaagacagtgcaaatcaaagtgccaaagacaaacctcaacccacagtacaacaaaaggga
aaggaatcgccagcgaagacgataaaagtggaagctgtcagcacgacctttgagaagcag
aaaccagtgcagaatagttcacatcaagtacaaaatacacagatcttaataaagcctaaa
aagtcgcgagttgcggcgaaattttgcatatcaactcaaattgaagaagccaatcatagt
aaaaatcaaaattcagattaa
DBGET
integrated database retrieval system
