Bombus terrestris (buff-tailed bumblebee): 100650605
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Entry
100650605 CDS
T04364
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
bter
Bombus terrestris (buff-tailed bumblebee)
Pathway
bter03440
Homologous recombination
bter03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bter00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100650605
03450 Non-homologous end-joining
100650605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bter03032
]
100650605
03400 DNA repair and recombination proteins [BR:
bter03400
]
100650605
DNA replication proteins [BR:
bter03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100650605
DNA repair and recombination proteins [BR:
bter03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100650605
BRCA1-C complex
100650605
NHEJ (non-homologous end-joining)
MRX complex
100650605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SbcC_Walker_B
Rad50_zn_hook
SMC_N
AAA_29
AAA_27
AAA_16
DUF6471
AAA_13
ABC_tran
AAA_28
AAA_22
Motif
Other DBs
NCBI-GeneID:
100650605
NCBI-ProteinID:
XP_012167136
UniProt:
A0A9B2JPN6
LinkDB
All DBs
Position
9:11824082..11830025
Genome browser
AA seq
1387 aa
AA seq
DB search
MSRIRRLSIRGIRNFGDLNDEAKIRFSRPLTLILGPNGTGKTTIIEALKFATCGEFPPGS
DRGKFFIHDPTLSATPSIRGVVKAEIIDAAGNMYIICRTIESTKGNVSVKFKTLDNALTR
IMKGQNKPVSISNKCANVDTELTLAMGVSKPILDYVIFCHQEDLNWPFQDGKKLKEKFDE
IFDSARFNKALENIMKYIKDMNQKMHILKEQKQNCQLIVSEVADKEAKLEDNKKRLEDSK
AKIVEFDKELEPVQQKIKKFEKLDADYKNLQNEEKRKKAEYDMFKQQLDRLEEDLQYVFE
GTKEELLKQIESHDEELIGQTDKIEELAKRLKNIAGKESSISSDLSNERVSNGSLRQQIK
DHERKVNLRNAILNEILSSWNIDNIDTNVSELEIMALTSRLTEKMEELRHCVEQKRLKRE
EEENALHKAIDSLRSKHSKVESEKNLKESEVTQTKEEINKIKLDIAQLGAAASKLSSIEL
RIQEVQKKVQELNEAMDVNVVKKEVVNKIKIRNEMETLLNTVDQEITLLSKQSTQQAELD
LNKSTLDSKEKEIEELKNKREEDIMTLFDIKELSQTKLKTNLDVVQKQLANEMESINQEI
QAEERRITTLETTISHIEHELQNKKREINSDKEKVSSVCHYKSFDETLLLQSKKVKDLQD
KRGMYAHQSVAYKEYMKQLRETNPSCPLCHRDFDKRENVVTLLKEMESEMENHPNRLKEC
ERELKTQQEKYDKMLQLKPVVEKIIQLEESELEKLMNSLEKSKNKLSISRTTVMELETKK
TCPKKKLAICKDIVGDIMLWDTYIDDISKLKQTIDNLQIRMTAAGIKTKRSLEEAQSQRE
ELKMSLKNIRDNIEELQSKINMHNEKLNNARQEQNTLQEEKLKIQSDIQKVKELKEKQET
LYSKEISLWKSINILKKQVTIAETELNSELEKLEEKRKDNSAKLECDRKLVTDAVRRLSE
LQRIQDEVDISVYNNVPESLENSEKKIKDYEKLLNELLCEKSDIETTINKLKENVTRQEV
RKRELSDNLALLQTQETTKNLQQKYLKIKEKLNAINYSQVLNDWKNVQSREQTILRQQNI
IKGNQEELERTLQQYTQELKKDIYRQARKNYKSKCIELTVIEEAILNLKAYSKALDVAMI
QYHEERMATVNRIIKQMWKLVYTGKDTTSIEIHTDATEGIGSTRRTYNYKLVQMKHGHEI
DMKGRCSAGQKVLASIIIRLALAETFCKDCGILALDEPTTNLDQENADSLAEALATVVKL
RSQHQKNFQLIVISHDEKFLFKLAELNSNKGFYQLYRKQNGYTAIRHCLVNSQDRIASDP
IKQESDEEESSNEESEERSILQDKLHETTSQRKAPNEQTHKKRRHISDDDADPPIESATS
KKRYIFQ
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgaataaggagactttctattcgtggtattcgtaattttggcgatctgaatgat
gaagctaagattcgattttctcgtcctttgacacttattcttggtccaaatggtactgga
aaaacgacaattattgaagcactaaaatttgctacttgcggtgaatttccacctggctca
gatcgaggaaaattttttattcatgatccaactctatcggcgacaccatcgatccgaggt
gttgtaaaagctgaaataattgatgcagcaggtaatatgtacataatatgtagaacgata
gagtcaacaaaaggaaatgtgtcagtgaaatttaaaactctcgataatgctttaactaga
ataatgaaaggtcaaaataagccagtatcaatatctaataaatgtgctaatgttgataca
gaacttacattagcaatgggagtttcaaaacccattttggattatgtgatcttttgtcat
caagaagacctcaattggcctttccaagatggtaaaaaattaaaagaaaaatttgatgag
atttttgatagtgctagatttaataaagctcttgaaaacattatgaaatatatcaaagat
atgaatcaaaagatgcatatattgaaagagcaaaaacaaaattgccaacttattgttagt
gaagtagcagataaagaagcaaagcttgaagataataaaaaacgattggaagattctaaa
gccaaaattgtggaatttgataaagaattagaacctgtgcagcagaaaattaaaaaattt
gaaaaattagatgctgattacaaaaatctgcaaaatgaagaaaagagaaaaaaagcagaa
tatgacatgttcaaacaacaactggatagattagaagaagatttacaatatgtgtttgaa
gggactaaagaagaattattaaagcagatagaatcacatgatgaagaattaataggacaa
actgacaaaatagaagagcttgcaaaaagattaaaaaatattgctggaaaagaatctagc
atatcaagtgatttatctaatgaaagagtatccaatggttctttaagacaacaaattaaa
gatcacgaaaggaaggttaatcttcgcaatgcaatattaaatgaaatattatcttcttgg
aatattgacaacattgatacaaatgtatcagaattagaaataatggcccttactagcagg
ctgactgaaaaaatggaagaattacggcattgcgtagaacagaaaagattgaaaagagaa
gaagaagaaaatgcattacacaaagcaattgattctttacgtagcaaacattcaaaagta
gaatcagaaaaaaatcttaaagaaagtgaagtaacacaaacaaaagaagaaattaataaa
ataaaattagatattgcgcagcttggtgcagcagcaagtaaactaagttccattgagtta
agaatacaagaagtacagaaaaaagttcaggaattaaatgaagcaatggatgtgaatgtt
gtgaaaaaagaagttgttaacaaaattaagattcggaatgaaatggaaacacttctaaat
acggttgatcaagaaataactttattatcgaaacagagtacgcagcaagctgaattagat
ttaaataaatctacattagattctaaagaaaaagaaatagaagaattaaagaacaaacgt
gaagaagacataatgactttgtttgatattaaagaactatcccaaactaaattaaaaact
aatctagatgtggttcaaaaacaattggcaaatgaaatggaatctatcaaccaagaaatt
caggcagaagaacgtcgaataactacattagaaacaacaatatcacatattgaacatgag
cttcaaaataaaaaaagagaaattaattcggataaagaaaaagtttcatcagtttgtcac
tacaaaagttttgatgagactttattattacaatcgaaaaaagtaaaagatcttcaagac
aaaaggggaatgtatgctcatcaaagtgtagcttacaaagagtatatgaaacaattaaga
gaaacaaatccttcttgtcctctatgccatagagattttgacaaacgtgaaaatgttgta
actttattaaaagaaatggaaagtgaaatggaaaatcatccaaatcgtttgaaggaatgt
gaaagagaattgaaaacacaacaggaaaaatatgataaaatgttgcaattaaaaccggtc
gttgaaaaaataatacaattagaagagagtgaattagaaaaattaatgaatagtttagaa
aaatcaaaaaataagttgagtatatctcgaacaactgtaatggaattagaaacgaaaaaa
acttgtcctaaaaagaaattagcaatatgcaaagatatcgtaggtgatattatgttatgg
gatacatacattgatgacatttccaaactgaaacaaacaattgataacttacaaattcgt
atgactgctgcaggcattaagacaaaacgtagccttgaggaagctcaaagtcaaagagaa
gagttgaaaatgtctttaaaaaatattcgcgataatattgaagaattacaatctaaaata
aatatgcataatgaaaaattaaataatgctcgacaagaacaaaatacattacaggaggag
aaattaaagatccaatcagatatacaaaaagtaaaagaattgaaggaaaaacaggaaacc
ttgtactcaaaagaaatttctctttggaaatcaattaatatattgaaaaagcaagtaact
atagcagaaaccgaattaaattcagagcttgagaaattagaagaaaagaggaaagataat
tcggcaaaactggaatgtgatagaaaattggtaacagatgcagttagacgtttatctgaa
ttacaaagaatacaggatgaggttgatatttccgtatataataatgttcccgaatcttta
gaaaactctgaaaagaaaataaaagattatgaaaagttgcttaatgaactgctttgtgaa
aaaagtgatatagaaacaacgattaataaattaaaggaaaatgttactcgtcaagaagtt
cgaaaaagggagttgtcagataatcttgcactgctgcaaactcaggaaacaaccaaaaat
ttacaacaaaaatatttaaaaataaaggagaaattgaacgctataaattattctcaagta
cttaacgactggaagaatgtacaaagtagagaacaaactatactccgtcagcaaaatata
attaagggaaatcaagaagaattggaaagaacactgcagcaatatacgcaagaactaaaa
aaagatatatatagacaagctcgtaaaaattataaaagcaaatgcatcgaattaacggtt
atagaagaagctatattaaacttaaaagcatatagcaaagcattggatgtggctatgata
caatatcatgaagagcgtatggccacagttaatagaatcattaaacagatgtggaaactt
gtatatactgggaaagatacaacatcaatagaaattcatacagacgcaaccgaagggata
ggtagcacaagaagaacatataattacaaattagttcaaatgaaacatggtcatgaaata
gatatgaaaggtcgttgtagtgctggtcaaaaagttctagcgtcgataattataagactc
gctttagcagaaacattctgtaaagattgcgggattcttgcattggatgaaccaacaaca
aatttggatcaagaaaatgctgatagtctagcagaagcgttggctacagttgtcaaattg
cgatcacaacatcagaaaaattttcagttaattgtaattagtcacgatgagaaattttta
ttcaaactagctgaattaaacagtaataaaggcttttatcaactttaccgtaagcaaaac
ggttacacagcaattagacattgtctagtgaacagtcaagatcgtattgcgtcagatcct
ataaaacaagaatctgatgaagaagagtcgtctaatgaagaaagtgaagaacgttccatc
ttacaagataaattacatgaaacaacttcgcaaagaaaagcgcctaacgagcaaacacat
aagaaaagaagacatatttcggatgatgatgctgatcctcctattgaaagcgcaacatca
aaaaaaagatatatatttcaataa
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integrated database retrieval system
