Bombus terrestris (buff-tailed bumblebee): 100650717
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Entry
100650717 CDS
T04364
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
bter
Bombus terrestris (buff-tailed bumblebee)
Pathway
bter03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bter00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100650717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bter03019
]
100650717
Messenger RNA biogenesis [BR:
bter03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100650717
mRNA cycle factors
Common to processing body (P body) and stress granule
100650717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
100650717
NCBI-ProteinID:
XP_012175868
UniProt:
A0A9B2JWU3
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All DBs
Position
3:complement(7031738..7037334)
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AA seq
1157 aa
AA seq
DB search
MGLNAAVQALKKAEPLKDKVQRCRDLLNDSDAWVCQQQLQKIYQQVLILDLEYALDRKVE
QELWNLGFKNYIATLQSQAKDRKNPKRGESQALLSWCLEAASGFYLTLLQEICTAFDLDL
PFRRKGYIYGCTSPWKAIEKLSVPHKSSCFYACQYCLVHLGDIARYRNESKQAELFYRHA
VSLSPSSGQPYNQLALLEASRGNKLATVFHYTRSVAVKHPFPVATTNLAKTLSSALNDTS
LNIDGKTKLSSQEYVAVFLKLHGVIHNLGDLKVASTYAKLLTETLTALVATESFSSWMLV
QMFVINLYALEHTTSVVMGNNEPLKHEQLTSDEKIARDCILDLIAGSLSALLLPVYTIKN
SIIEYFALPSIKLCLDWIHTKPTVLEELAFTSRLQIWPSLCVLLNALQNCVADFAYDQYI
KVPLPEDRDLQGFLPLEKSFECLKFTSTDLEDNVEASNKLRAVRILRLGHCLAQYRINGT
ALIAITLGEEKGDNRFSSMSEGNGLSNELMKELEELSLNKGRQSAVSTSPVLSESASSKG
STDVDMLEHALDKKIGILKPQGSLERSKDTVLITSTESSTFETNVQPTTRKPRQNIAMQT
IMRRAETEQKQVTFKNLSPLNVEEESEKKFKLSGASVSPVKGVPPGGNKNISVVGEISKM
NNVSNVIANTPITVQSRLPLMPSATSTVQSQIITTQNQVKTTKLQHAVSASQSSQINHLS
VKEQQASGIPTPISGISQCVGTICYQNPTFNVQNPQFTKNYVTNHVGNLSSYPIQGHFTS
SVQQSIQSQSIGLQYTSSQNRSMHQRTQTHNIPQNTLLHQNLGILSSAQPSNVIPNASQN
INSQQSRNIGVQQNRSLNTQQNHNLNVQQQNVMKTSLRPSTISLHNQGTLPNSTIANVST
LSTLNTYQKKLHHAAPIIPNTSNVPSNSLNPTTTPNFQYNFNQNDFNQNAFGQVPQKQLS
SVYNKNSDVLEFSLPNHLGMSKNQSQSTTNYPLFQNYETTNFNLWKDTQQSQHSIPCWGS
TSRSMQLHSEDTSVIENYHNWEDSSNPGNIMSQIPLRTSNSYPSDSQQTKHFGTGSNFES
SRSLEVDSKSNQSISTGNTYSLFSSNNAWGSNVQSCNVSNQDQTKTRLNQQSLWFGPGPS
PLERLLEQQKSLREGGT
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgggcctaaacgcagctgtacaagctttaaagaaagcagagcctttaaaggacaaagta
caacggtgcagagatcttctaaatgatagtgacgcgtgggtatgccagcaacagctacag
aagatatatcaacaagttctgatattggatttggaatatgctttggaccgcaaagttgag
caggaactttggaatttaggatttaaaaattatatagcaactttacaatcccaggcaaag
gatagaaaaaatcctaaacgtggagaatctcaagctttacttagctggtgcttggaagct
gctagtggtttttatttgacattattacaagaaatttgtactgcatttgatctagattta
ccatttagaaggaagggttacatttatggatgtacatcaccatggaaagctattgaaaag
ttatcagtgcctcataaatcttcatgtttttatgcgtgccaatattgccttgtgcattta
ggggatattgctcgttatagaaatgaaagtaaacaagcggagttattctataggcatgct
gtatcattgtcaccatccagtggacaaccatacaatcaattagcccttcttgaagcatcg
cgcggtaataaattggcaactgtttttcattacacacggtctgtagctgtaaaacatcct
tttcccgttgccacaacgaacttggcaaaaacattatcgtccgctttgaacgatacgtcg
ctgaatatagatggaaaaacgaaattatcttctcaagaatatgtagcagtttttttgaaa
cttcatggcgttatccacaatcttggcgacttaaaagttgcttcaacatatgcgaaatta
ttaactgagacattgacagccttagttgccacagaaagttttagctcttggatgcttgtt
caaatgtttgtgattaacttgtatgccttggaacatacaacgagtgttgtcatgggtaat
aatgaaccgctaaaacacgaacaattaacatccgacgaaaagattgctcgtgattgtatt
ttggatctcatagctggaagcctgtctgctttattgttacctgtttatacaatcaaaaat
tctattattgagtattttgctttgccttctataaaactgtgccttgattggattcataca
aaacccacagttttggaggaactagcttttacatcgagacttcaaatttggcccagctta
tgcgtattgttgaacgctttgcaaaactgtgtggccgatttcgcatatgatcaatatatt
aaggtaccactgccagaggatcgtgacctacaaggattcttaccattggagaaaagtttc
gaatgtttaaaatttacgagtaccgatttagaagataatgtcgaggcttccaataaactg
cgtgcagttcgtattcttcgtttaggtcattgtttagcacagtataggatcaatggtact
gcgttaattgctattacattaggagaagaaaagggtgataacaggttcagttctatgagt
gaaggaaacggtttgagtaatgaattgatgaaagaattagaagaactcagtttaaataaa
ggaagacagtctgctgtatcaactagtccagttctctcagagtctgccagcagtaaaggt
tctaccgacgtcgatatgttggaacatgccttagataagaaaataggtatcttgaagcct
caaggttcgttagagcgaagtaaagacacggttttgatcacctctacggaatctagtact
tttgaaactaatgtccaacctactacaaggaaaccaaggcaaaacatagcgatgcaaacg
ataatgcgacgtgctgaaactgaacaaaaacaggttacgtttaaaaatttgtctccatta
aatgtagaagaggagagtgaaaaaaaatttaaattgagtggagcatcagtgagtccagta
aaaggtgtccctccaggtgggaataaaaatatatcggttgttggagaaatatcaaagatg
aacaatgtttcaaacgtgattgcgaatacaccaatcaccgttcaaagtcgattaccgttg
atgccttctgctacatctactgtgcaaagccaaatcattaccactcaaaatcaagtaaag
actacaaaattacagcacgctgtttcagcatcacaatcttctcaaattaaccatctttct
gtaaaagaacaacaagcgtccgggattccgactccaatatctggaatatctcaatgtgta
gggactatttgttatcaaaatccaacatttaatgttcagaatccacaatttacgaaaaat
tatgtcacgaatcatgttggaaatctatcgagttatccaattcaaggacattttactagt
tcagtacaacaatcgatacaatcacagagtataggtttacaatatacatccagtcaaaat
aggtctatgcatcagagaacacagactcataacatacctcagaatacattgttgcatcaa
aatcttggaatactgtcttcagctcaaccgagtaatgttataccaaatgcttcacaaaat
attaattcccaacaaagtagaaatattggtgtgcagcaaaatcgtagtttgaatactcaa
cagaaccacaacttgaatgtgcaacaacagaatgttatgaaaactagtcttagaccaagc
acaatatctttacataatcaaggtacattacctaattcaactattgcaaatgtttctact
ttgtcaacattaaatacatatcaaaagaaacttcatcacgctgctcctattataccgaat
acatcaaatgtaccaagcaattcactaaatccgacaactacgcccaattttcagtataat
tttaatcagaatgattttaatcagaatgcctttggtcaagtaccacaaaagcaattgtcg
tccgtgtacaataagaattcggatgttttggaattttcgttaccaaatcatttaggtatg
tcaaaaaatcaatctcagtccacaactaattatccgcttttccaaaactatgaaaccaca
aatttcaatctgtggaaagacactcaacagtcacaacattctataccttgctggggttca
actagcagaagtatgcaattacatagtgaagatacgtctgttattgaaaactatcataat
tgggaagactcctctaatcctggaaacataatgtcacaaattccattgagaacttcgaat
agttatccatcagattctcaacaaaccaagcattttggtactggaagtaattttgaaagt
tctagatctttagaggtagacagcaaatcaaatcaatcaatcagcacaggaaacacgtat
tctctatttagcagtaacaatgcatggggatctaatgtacaaagttgtaatgtgtcaaat
caagatcaaacaaaaactcggcttaatcaacaatctttatggtttggacctggaccatct
cccttggaacggcttttggaacagcaaaaatcattacgtgaaggaggtacctga
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