Bombus terrestris (buff-tailed bumblebee): 100651069
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Entry
100651069 CDS
T04364
Name
(RefSeq) uncharacterized protein LOC100651069 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bter
Bombus terrestris (buff-tailed bumblebee)
Pathway
bter03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bter00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100651069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bter03021
]
100651069
03019 Messenger RNA biogenesis [BR:
bter03019
]
100651069
Transcription machinery [BR:
bter03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100651069
Messenger RNA biogenesis [BR:
bter03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100651069
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
HEAT_MROH2B_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
100651069
NCBI-ProteinID:
XP_012174738
UniProt:
A0A9B2JY08
LinkDB
All DBs
Position
2
Genome browser
AA seq
1896 aa
AA seq
DB search
MTSTKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVENHLQKVRSDI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAK
KLFSLDVRVQSIDPAWPITASPTSVSSGSIHVNPRFFSMPQQSATSIVSQPIVAPVKLPP
GDPVTPTEAAMREQLLKKQRELIELQKKKIELELLQAKANLEQQQRQLDKQAGNLKAELV
AVTTHITPSTEAVTQGKPVATTVPSQASKQVAKQFPAAAASLLKNAGTNNGPRIAPASSI
AVASAKPVSRDPRLKTTSAQDVPVSSVDPRQRISTPTQKDSRGEGQAQLAAHTNTVLSDQ
LKQQLLSKQAVTSTINKSPTNLAGSDTATLNASNNNNANTNLNNNNNNKNFSGNANKDAV
SHRTSQKKDPRLSSNSSGNLNSNNSKGSQSLSMGSNSSLSASNRGGGNNDSKSKDSKSSN
SRTSSSSAIDKSASSKSSHRKLGNKSRSKQPQTSPCKIPKVDRDASPVRSKSREKDSGDS
SPSSRTSPQSFQNSKNRKKNTKSRKRSPSPPYRIPRRNDAKSNLSLSNSSGVTEEEQSGS
LIVSPPHPPTFKEIRPNARQRNYVRRNKDGSLSPERSPANAGNVQTAVEPTLESSSKDED
LRATLPLPGAAASVLEKKEDLDLRVLPPAVNTNKRQTAEHMESTLVKKTKAEKFDALFGN
EDVDLRTLTHPKAGRPPTPPPPVISGEDGKDGWAKLKTPSKNDREKQANNTDDKRDARDR
NRDRLGRLRLYNKLPDDPKERRRTLSNEDQDNRSGRRGRENDKPEKNEDRNIEIIMKQAA
EQLNQGSITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEVGSIVWEKGVNLDIPGPGERTS
TFSPSGDKEMMRNKDHPIARNPNGPRWQNQPWQQPGPWAHPPGPPYGGPQGHFNSDFRPV
GPWQNPRHFGPMRPDYQYHGGFNHSIGPNPRLGPGMMGPMGPNGPLMSNLLPNGPLGPMG
MPNPPISLPGMNGPGMMINNGPMTSLISNTNMSSLNASRNVSPSSSSKYDIEDGDQNYTT
TMIKNPNPHSRELPPPDSKLLDEIARDTMKSIDIDIQHIPREIRYYGQTGVVFMNWDDPR
EIGFQDGIRRILIDDKITITCAFNDNYKEFIYEGEVHRIKLGAPTRELYIDDRWYECYFG
GMPITVDLGGKKVSVKLEGPPPLVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIF
EIEGKPHTLEFIDSLQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRPGYVK
IAGMKGEEPIEAPPTPPLLTQKPKVDAASTPTQFSTVEHESTSQDGSDLRSTPKPDLQLD
VLSSALPSAMAPSSGLSYQAEPAENPPTTAPPLSLPLNMNELFQRLVETGIVSNLSEQKK
QEEEEKKEPEIIPVSFDKPETLKVKQSAIAAALYSGMQCSSCGARFAPELATRYSHHLDW
HFRQNRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRVQSWFETEKQTADTEGITAED
SPQEASQPSVPTGTDEDSRCQVCHDAFEQFYNEEKEEWHLRPAINFEGKNYHPLCLDDYK
RALEKSALEETIEEMEDEKKESSDETFAEENKTDELSMEALKTEFETAEPSDEIIKDKVP
EESTEMETKEEETIIEDNADIEQNEKMEEQELEYSNKEDVDMESIEKEDTTETEIPETEN
VDKSFENIKIKEEPIDEPEEQLEEEHFDFTNIEIKEEPIEQEPDPEESIITEPATVDTTY
AAVKSSIDGNVELDSTPAAIPAAPSRIKINITKPLCINKEPEDSKEKEKPIVETPTEEII
EPLVPASIKPTLQGRKLSNLPPVERGQELSGLCSIM
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaacaaagtctaaggaaatagcggatgagtatatctcatcgttgtctgatttg
acgattaacagtaaaccattaattaatatgcttactatgttggctgaagataacatagaa
catgcaccagcaattgtacaagctgttgagaatcatctacaaaaggtgagaagtgatatc
aaattacctgtcctttatttgattgattcgattgtgaagaatgttaatggagcatattta
aatctcttcactcaaaatattgtaaatactttttgtggagtgtttgaaaaggtggatgag
aatacaagagccagtatgtggaaattgaggcaaacatggaatgatgtatttccagcaaag
aaattattttctttggatgtacgagtgcaaagtattgatcctgcctggccaatcactgcc
tctcctactagtgtttcttctggatctattcatgttaatcctcgttttttttcaatgccc
caacaatcagcaacatctattgtctcacaaccaattgtagcacctgttaagcttccacca
ggtgatcctgtgacaccaacggaagcagcaatgcgagagcaattattaaagaaacagcga
gaactgatagaactacagaaaaaaaagattgaattagaattactccaagctaaagctaat
ttagaacaacaacagcggcaacttgataaacaagctggaaatttaaaagctgaactggtt
gcagttacaacacatattacgccaagcacagaagctgtcacacaagggaaacctgttgca
accactgtgccaagtcaagcatcaaagcaagtagcaaaacagtttccagcagcagcagct
tcgcttctgaaaaatgcaggaacgaacaatggcccacgaattgcaccagctagtagtata
gcagtagcatcagctaaaccggtatctcgtgatccaagattaaaaactacctcggctcaa
gatgtaccagtttcaagcgtggatcctcgtcagcgaataagtacaccaactcagaaggat
tcgcggggtgaaggccaagcgcagttagcggcacatacaaacactgtactttcagatcaa
ttaaaacagcagttactttcgaaacaggctgtgactagcactatcaacaagtctccgaca
aatcttgccggctccgatactgcgacgttaaacgctagtaataacaataatgctaatacg
aacctcaacaataataataacaataaaaatttcagtggtaacgcaaataaagatgctgtg
tcgcatcgaacaagtcaaaagaaagaccctcgattgtctagtaatagtagtggtaaccta
aacagtaataattccaaaggttctcaaagtctatctatgggtagcaatagttctttatct
gcgagtaatagaggaggtggaaataacgattccaagtcgaaagactcgaagagttcaaat
tctcgaacttcttcatcttcggcaatcgacaaatctgcttcctcaaaatcctcgcataga
aaactaggtaacaaatcgcgatctaaacaacctcaaacatctccgtgtaaaataccgaaa
gtcgacagagatgccagtcctgttaggtccaaatctcgtgaaaaagatagtggagacagt
tcaccatcctcgcgtacctctccccaatccttccaaaactctaaaaatcgaaaaaagaat
acaaaatcgagaaaacgcagtccaagccctccatatagaattcctaggcgcaatgatgca
aaatccaatttaagtctaagcaattctagtggtgttactgaggaggagcaatctggttca
ttgatagtctctcctcctcacccacctacatttaaagaaatcagaccgaatgctagacaa
agaaattacgtaagacgtaataaggatggcagtcttagtcccgagcgttctccagcaaat
gctggaaacgttcaaactgctgtggaaccaactttggaatcatccagcaaagatgaagac
ttgagagcaacactacctcttccaggtgcagccgcttctgtattagaaaagaaagaggac
ttagatttgcgtgtattaccaccagcagttaatactaacaaaagacaaactgcagaacac
atggaatctacattagtaaagaaaacaaaagctgaaaagttcgatgcattatttggaaat
gaagacgttgatctgcgaacattaactcatcctaaagctggacgaccacctacaccgccc
ccacccgtaatatctggtgaagatggcaaagatgggtgggcaaaactaaagacaccatca
aagaatgacagagaaaagcaagctaataatactgatgataagcgtgatgctagagatcgt
aatagagatagattgggtagactgaggctttataacaaacttccggatgatcctaaagaa
agaagaagaacattatcgaacgaagatcaagataacagatcaggtcgaagaggtcgagaa
aatgataaacctgaaaagaatgaagacagaaatatagaaataataatgaaacaagctgca
gaacaattgaatcaaggatccattactaaaactcaatacaatactctcattcaagaagtt
ttacatatgagcgaagatcggaaattaagagctgcacaacgaaaggaaaaagaagtaggt
tctattgtatgggaaaaaggtgtaaatttggatataccgggtccaggtgagcgtacgtct
acatttagtccttctggtgataaggaaatgatgagaaacaaagatcatcctattgcaaga
aatccgaatggccctagatggcaaaatcaaccatggcaacaaccaggaccatgggctcat
cccccgggacctccttacggtggaccacaaggacattttaattcagattttagaccagtt
ggtccatggcaaaatccaagacacttcggaccaatgcgaccggactatcaatatcacggt
ggcttcaatcattctattggtccaaatccacgattaggacctggaatgatgggacctatg
ggacctaatggtccgctcatgtcaaatttattacctaatggtccacttgggccaatgggc
atgcctaatccacctatatcattaccgggaatgaacggacctggaatgatgataaataat
ggaccaatgacaagtcttatatcaaatacaaatatgtcatcattgaatgcttcaagaaac
gtatcgccaagttcgtcttcaaagtatgatatcgaagatggtgatcaaaattatactaca
acgatgataaagaatccaaatcctcatagtcgtgaattaccgccaccagactcaaaatta
ttagatgaaattgcaagagatactatgaaatctatagatatagacatacagcatatacca
cgtgaaatcaggtactacggtcaaactggagtagtttttatgaattgggatgatccaaga
gaaatcggatttcaagatggtatacggcggattttaattgatgataagatcactataacc
tgtgcatttaatgataattacaaagaatttatttatgaaggtgaagttcatagaattaaa
ttaggtgcaccaacgagagagttatatattgatgatagatggtatgagtgttatttcggt
ggtatgccaataacagtagatcttggtggtaaaaaggttagcgtgaaattggaaggacct
ccaccccttgttaagattggtactgtaaagagaacagacttagtagttgccaaaattaat
cttattattaatgcccgaaatatggttcctgtatttttagatgcaaaacctcaaatattt
gaaattgaagggaaacctcatacacttgaatttatagactcgttacaaacagttctttta
aatggacggccatttaaagtggaattcggtggactgcctaaaccaattattgttagggat
aaaaagcattttataagattttcggtactgcctagaggtgtccgaccaggatatgttaag
atagcaggtatgaaaggtgaagaacctatcgaagcaccacctaccccgcctctattgaca
caaaagccgaaagtggatgcagcttctacaccaacgcagttttctactgttgaacatgaa
tcaacgtcacaagatggttccgatcttagatctactcctaaaccggatttgcaattagat
gtgttatcttcagctttaccatctgcaatggcaccatcgtctggattatcttatcaagct
gaaccagctgaaaatccacctacaactgctccaccattatcattaccgctgaatatgaat
gaactgtttcagagattagtagagactggtattgtatcgaatctttctgaacaaaagaaa
caagaagaggaagaaaagaaggaaccagaaattattccggtttcatttgataaaccagaa
actcttaaagttaagcaatcggctattgcggcagcattgtatagtggcatgcagtgtagt
tcttgtggtgccagatttgcaccagaattagcaactcggtacagtcatcatttagattgg
cactttaggcaaaacagacgagaaagagattctgcaaggaaggctcattcacggccttgg
tattatgatgttagtgattggatacagtttgaagaaattgaagatttagaagatagagta
caaagttggtttgaaacggaaaaacagacggctgatacagaaggtatcacggccgaggat
tctcctcaagaagcctcacagcctagtgttcccactggaactgatgaggattctagatgt
caagtatgtcatgatgcatttgaacaattttataatgaagaaaaggaggagtggcatcta
agaccagcaattaactttgaaggaaagaattatcatccattgtgtcttgatgattacaag
agagctttggaaaaatctgcgcttgaagaaacaatagaggaaatggaggatgaaaaaaag
gagagctcagatgaaacgttcgcagaagaaaataagactgatgaattaagtatggaagca
ttaaaaactgaatttgaaacagcagaaccgtcagatgaaataataaaagataaggtaccg
gaagaatctactgaaatggagactaaagaggaggaaactataattgaagataatgcagat
attgaacaaaatgaaaaaatggaagaacaagaattagaatatagtaataaggaggatgtt
gatatggaaagtatagaaaaagaagatacaactgaaacggaaataccagaaacggaaaat
gtggataaatcctttgaaaatattaaaattaaagaagaaccaattgacgaacctgaggaa
caattagaagaagaacatttcgattttactaatatagaaattaaagaagaacctattgag
caagaaccagatcctgaagaaagtataataaccgaacctgcaacggttgatacaacatac
gcagctgtgaagagttctatagacgggaatgtagaattggattctacgcctgcggcgata
ccagcggctccatctcgaattaaaatcaatattacgaaaccattgtgtatcaataaagag
ccagaagattcaaaggaaaaagaaaaacctatagttgagacacctactgaagaaataata
gaacctttggtgcctgcttctatcaaacctactttgcaaggtagaaaactttcaaattta
cctcctgtggaaagagggcaagagttatcaggactctgctcaattatgtaa
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integrated database retrieval system
