Bacillus thuringiensis serovar finitimus YBT-020: YBT020_00250
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Entry
YBT020_00250 CDS
T01839
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btf
Bacillus thuringiensis serovar finitimus YBT-020
Pathway
btf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YBT020_00250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btf03400
]
YBT020_00250
Enzymes [BR:
btf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YBT020_00250
DNA repair and recombination proteins [BR:
btf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
YBT020_00250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADY19303
LinkDB
All DBs
Position
54545..58075
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA
PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSGI
KHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYNEPASLIDY
LPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHSFEEFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTILFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagagatccaatcggtcattaatgga
ttagaagatgggttaaaagagcaacttgtatcaggtatggcaacctcttctcgttcgtta
ttaatggcggccttatataaaaaaacaaaaaaatcacaacttattgtgacgcataattta
tatcaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaagatgtatgg
ctatatccagtaaatgaattgatagcatcagaacttggtgttgcaagcccagaattgaag
gcgcaacgtattgaagtgttaaatcgcttagctgcaggagaacatgggattattgtagca
ccagttgcaggactacgcagatttttaccaatgaaagagttgtggaagcaaaggcaaatc
gaaatcaatctagggcaagagattgatttagatacattcttgcatactttacatcatatc
ggctatgagcgtaagtctatggtagaagctcctggagaatttagtttacgcgggggaata
ttagatatttatccactaactgaagagctaccatttcgtattgaatttttcgatacagaa
gttgattctattcgattatttgatgtggatgaacagcgctctcaagataaaaaagaaagt
gttagatttggtccagcaacagagtttttattttcgcaggaagaattgaaatcaggaatt
aagcatcttgaagaaggtctgactaagacgatgcaaaaactttctgatgataagttgaag
actacagtgcttgagacggtaagtcatgaaattgagatgttaaaaaacgggcaaagtata
gaacagatgtttaaatatttatctattttctataacgaacctgctagtctgatagattat
ttaccagaagatggtgttgtgattttagatgagatttcacgtattcaagaaacagcatca
catcttgaaacggaagaggcggaatggtatatatcccttctcggtgagggaacaatcatt
caagatttatctttctctcattcgtttgaagaatttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttacgtcatatagcacatacacatccgcaaaacattgtgaat
gtgacatgtaaaacaatgcaagatttccatgggcagatgcagttgttgaaaactgaaatt
gatagatggaacgaagggcattttacgactgttgtgttaggtacagatgatgaacgtgtg
aaaaaactacaacatattttaagtgattatgatattgaggcagatattgtagaaggcaca
gatatattattgcctggaaggctacaaattgctgtaggtgatttacatgcaggatttgaa
atgccgatgcaaaagcttgttgtcattactgaaaaagagcttttccataagaaagttaaa
aaatcacaacgtaagcaaaagttatcgaatgctgagcgtattaaaagttattcggaatta
aaagttggggattatgtagttcatgtaaatcatggtataggtaaattcttaggtattgaa
acattagagattaacggtgttcataaagattatttgaatattaaatatcaaggtaatgat
aagttatacgttccaattgaacaaattgaccaagtgcaaaaatatgtaggatctgagggt
aaggatccgaaagtttataaattgggtggaaatgattggaagaaggtcaagacgaaagtt
gaaaaatctgtacaagacattgcggatgacctaattaaactatatgctgagcgcgaagct
tcaaagggttatgcatatacaccggatacggcagaacaacaagaattcgagtcctctttc
ccgtatcaagagacagaggatcaattacgttctattgaagagattaaaaaggatatggaa
cgtggacgtccgatggataggcttctttgtggtgatgtaggatatggaaagacggaagta
gctattcgtgcggcgtttaaagcaattatggatgaaaaacaagttgcaattttagtgccg
acaacgatccttgcacaacaacactatgaaacaattcgagagcgttttcaagattatcca
atcaatataggattattaagtagattccgtacgagaaagcagcaaaatgaaacaattaaa
ggtttaaaagatggcacagtagatattgtaatcggaacgcaccgtattttatctaaagat
gttacttataaagatttaggtcttcttattattgatgaagaacaaagatttggtgtaacg
cataaagaaaaaattaaacaattaaaagcaaatgttgacgtattaacattaacggcaact
ccgattccgcgtacgctccatatgtctatgcttggtgtgcgtgatttatctgttattgag
acgccgccggaaaatcgtttcccggttcaaacatatgtagtagagtataatccagcatta
atgcgagaagcgatagaacgggagcttgcaagaggtggtcaagtttacttcctatataat
cgtgtagaggatatcgaacgaaaagcagatgaaatttcgatgttagttccagatgcgcgt
gtaacttatgcacatgggaaaatgaacgagagtgaattagagtctgttatgctatcgttt
ttagaaggacagcatgatgttcttgtaagcacaacgattattgagacgggtgtagatatt
ccaaatgtaaatacattaattgtatttgatgcagatcgtatgggattatcgcagttgtat
cagcttcgtgggcgtgttggacgttctaatcgtgttgcatatgcttactttgcatacaaa
cgggataaagtgttatcggaagttgcggagaagcgcctgcaagccattaaggagttcaca
gagcttggatctggtttcaaaattgcgatgcgagatttatcaattcgtggtgctggtaac
ttgttaggagccgaacaacatggatttattgattctgtcggatttgatttatattctcaa
atgttaaaagatgcaattgaacagcgtaggggaacagacggagttgaaaatacagttaat
gttgaaattgatttagaagtagatgcatatttaccggatgcttatatttctgatagtaaa
caaaaaattatgatgtataaacagtttagaggtgtttctgcaattgaggatattgaagag
ttgcaggaagagatgatagatagatttggtgattacccgcaagaagttggttacttattg
caaatcgcaaatattaaagtattagcaatgaaagaacaaattgaattaattaagcaaaat
aaatttgaagtaacaattctgttctcagaacaagcgagtcaaaacattgatggcggaaaa
ttatttatgcttggaaatagttttggacgaatgatcggtctaggaatggaaggatcacaa
ttgaaaatcgtcatgaaaacaaatggcttagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcttgccagatgtaaaaaaagaagtcataaatgcctaa
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integrated database retrieval system
