Bacillus thuringiensis serovar finitimus YBT-020: YBT020_14060
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Entry
YBT020_14060 CDS
T01839
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
btf
Bacillus thuringiensis serovar finitimus YBT-020
Pathway
btf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YBT020_14060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btf03019
]
YBT020_14060
03400 DNA repair and recombination proteins [BR:
btf03400
]
YBT020_14060
Enzymes [BR:
btf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YBT020_14060
Messenger RNA biogenesis [BR:
btf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YBT020_14060
DNA repair and recombination proteins [BR:
btf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YBT020_14060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_7
HTH_38
HTH_10
HTH_45
HEM4
HTH_23
HTH_35
Sigma70_r4
A-ATP_synth_H_N
HTH_28
HTH_29
Motif
Other DBs
NCBI-ProteinID:
ADY22044
LinkDB
All DBs
Position
complement(2741612..2743729)
Genome browser
AA seq
705 aa
AA seq
DB search
MFTKAQELLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTT
LVISPLISLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDS
MEFVDQLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQ
VRDDICNTLGINQENTIMTTFERENLSFSVIKGQDRNAYLADYIRQNQKESGIIYAATRK
VVDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY
VIHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEK
LQNMTDYCHTEQCLQSFILQYFGEETKEDCGRCGNCTDDRESIDVTREAQMVLSCMIRTN
QRFGKQMIAQVLTGSKNKKVIEFNFHTLPTYGLLSNRSVKEVSEFIEFLISDELIAVEHG
TYPTLKVTEKGKEVLLGKENVLRKERVETRQIVQDHPLFEVLREVRKEIAQGEGVPPFVI
FSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKYGSHFLQAVQHFIDENPNYAETIKTEV
VTERKKSGKASANSHLETYEMYKQGINLAEIAKERGLSRQTIENHLIRCFEDGMEVDWNS
FVPAEYEQLIETAVQNADGGLKSIKEQLPNEVSYFMIRAYLQIRK
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
ttgtttacaaaagcacaagaacttttagcgtcttatttcggttattcgtcattccgaaga
ggacaagatgaaacaattaaaaatgtattagatgggaaagatacagtttgtattatgcct
acaggtggtggtaagtcaatttgttatcaaattcccgcattagtatttgaaggaacaacg
ttagttatatcgcctttaatatcacttatgaaagaccaagtagatacattagtacaaaat
ggtatttcagctacatatattaatagttctatttcgattacagaagcgaatcaacgaatt
caattagcgaaacagggccattataagttactttatgtagcgccagagcgacttgattca
atggaatttgttgaccaactgatcgatatgaaaatcccgatgattgccattgatgaggcg
cactgtatttcgcagtggggacatgatttccgtccgagctatttacatatacaccgtata
ttagattatcttccagaaaaaccgctcgtattagcattaactgctacggcaacaccacaa
gttcgtgatgatatttgcaacacgcttggaattaatcaagaaaacacgattatgacaacg
tttgagcgcgagaacttatcattttctgttattaaaggacaagatcgtaatgcatattta
gcggattatattcgtcaaaatcaaaaggaatctgggattatatatgcagctactagaaaa
gtagttgatcagttgtatgaggatttaatgaaagcgggagtttctgtatcaaaatatcat
gccggtatgagtgataacgatcgaaatgagcaacaagaactctttttacgtgatgaagtg
agtgtaatggtagccacatctgcgtttgggatgggtattgataaatcgaatattcgttac
gttatccattatcaacttccaaaaaatatggaaagttattaccaagaagcaggacgtgct
ggccgtgacggattagatagtgcatgtatattgctttattcttctcaagatgtacaagta
caacgctttttaattgatcaatcgacaggagagtctcgtttttcaaatgaacttgaaaaa
ctgcaaaatatgactgactactgtcatacagaacaatgtttacaatcatttattttgcaa
tactttggagaagaaacaaaagaagattgtggccgctgcggtaattgtacagacgaccga
gaaagtatcgatgtgacgagagaagcgcaaatggttttatcttgtatgattaggacgaac
caacgatttggtaaacaaatgattgcacaagtactaactggatctaaaaataagaaagtc
attgaatttaattttcatactttgccaacttacggacttttatcaaatcgtagtgtaaaa
gaagtgagtgaatttattgagtttttaatttcagacgaattaattgcagttgaacatggt
acttacccgacactaaaagtgacggaaaaagggaaagaagtgttactaggtaaagagaat
gtattacgtaaagaacgagtagagacaagacaaatcgttcaagatcatcctttatttgaa
gtacttcgtgaagtacgtaaagaaattgcacaaggagaaggtgtacctccattcgttatt
ttctctgaccaaacgttgaaagatatgtgcgcaaaaatgccgcaaagcgattctgaactt
ttaactgtaaaagggattggtgaacacaaacttgtgaagtatggttcgcacttcttacaa
gcagttcagcactttattgatgaaaacccaaactatgctgaaactattaaaacagaagtg
gtgacagagcggaagaaatcagggaaagcttcagcaaattctcatttggaaacgtatgaa
atgtataaacaaggtattaatctagctgaaattgcgaaagaacgtggattatcaagacaa
acgattgaaaatcatttaattcgttgttttgaagatggaatggaagtagactggaacagt
tttgttcctgcagaatacgaacaactgattgaaactgctgtgcaaaatgctgatggtggt
ctgaaatcgattaaagaacaacttccgaatgaagtgagttactttatgattcgtgcttat
ttacaaattagaaagtag
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