Bacillus thuringiensis Bt407: BTB_c00590
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Entry
BTB_c00590 CDS
T02277
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btg
Bacillus thuringiensis Bt407
Pathway
btg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BTB_c00590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btg03400
]
BTB_c00590 (mfd)
Enzymes [BR:
btg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BTB_c00590 (mfd)
DNA repair and recombination proteins [BR:
btg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BTB_c00590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AFV15859
LinkDB
All DBs
Position
54111..57641
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA
PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI
LDVYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSGI
QHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYKEPASLIDY
LPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHAFEGFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMNLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTIDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTFLFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagagatacaatcggttattaatgga
ttagaagatgggttaaaagaacaacttatatcagggatggcaacgtcttctcgttcatta
ttaatggcggctttatataaaaaaacaaaaaaatcacaattaatcgttacacataactta
taccaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaagatgtgtgg
ctatatccagtgaatgaactgatagcatcggaaattggggttgcaagtccagaattgaag
gcgcaacgtatagaagtgttaaatcgcttggctgcgggagagaatggaatcattgtagcg
ccagtggcaggattgcgtagatttttaccaataaaagaattgtggaagcaaaagcaagtt
gaaatcaatctagggcaagagattgatttagatgcgctcttgcatactttacatcatatt
ggctatgaacgtaagtcgatggtagaagctccaggggagttcagtttgcgcgggggaata
ttagatgtttatcctttaactgaagaactaccatttcgtattgaattttttgatacagaa
gtcgattctattcgattatttgatgtggatgaacagcgttctcaaggtaaaaaagaaagc
gttaggtttggtccagcaacagagtttttattttcacaggaagaattaaaatcaggaatt
cagcatcttgaagaaggtttgactaagacgatgcaaaaactttctgatgataaactaaag
actacagtgcttgagacggtaagtcatgaaattgagatgttgaaaaacgggcaaagtata
gaacagatgtttaaatacttatctattttttataaagaacctgctagtctgatagattat
ttaccagaagatggtgttgtaattttagatgagatttcccgtattcaagaaacagcatca
catcttgaaacagaagaggcggaatggtatatatcacttcttggtgaaggaacaattatt
caagatttatctttctctcacgcatttgaggggtttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttgcgtcatatcgcacacacacatccgcaaaatattgtaaat
gtaacatgtaaaacaatgcaagatttccatggacagatgaatttgttaaaaacagaaatt
gatagatggaatgaagggcattttacgactgttgtacttggaacagatgatgaacgtgtg
aagaaattacaacatattttaagtgattatgatattgaggcagatattgtagaaggcaca
gatatcttattgcctggaaggctacaaattgctgtaggtgatttacatgcagggtttgaa
atgccgatgcaaaagcttgttgtcattactgaaaaggagctttttcataagaaagttaaa
aaatcacaacgtaaacaaaagttatcgaatgctgaacgtattaaaagttattcggaatta
aaagttggagattatgtagttcacgtaaatcatggtataggtaaatttttaggtattgag
acattagagattaatggtgttcataaagattatttaaatattaaatatcaaggtaatgat
aagttatacgttccaattgaacaaattgatcaagtccaaaaatatgtagggtctgaaggt
aaggatccgaaagtttacaaattaggtggaaatgattggaaaaaggttaaaacgaaagtt
gaaaaatctgtacaagacattgcggatgacctaattaaactatatgctgagcgcgaagct
tcaaaaggctatgcatatacgccagatacggcagaacaacaagagttcgaatcatctttc
ccatatcaagagacagaggatcagttacgttctattgacgagattaaaaaagatatggaa
cgcggacgcccgatggataggctcctttgtggtgatgtagggtatggaaagacggaagtg
gctattcgtgcggcatttaaagcaattatggatgaaaaacaagttgcaattttagtaccg
acaacgattcttgcgcagcaacactatgaaacaattcgagagcgttttcaagattatcca
atcaatataggattattaagtagattccgtacgagaaaacaacaaaatgaaacgattaag
ggcttaaaggatggcacaatagatattgtaatcggaacacatcgtattttatctaaagat
gtcacttataaagatttagggcttcttattattgatgaagaacaaagatttggtgtaacg
cataaagaaaaaattaaacaattgaaggcgaatgttgacgtattaacattaacggcaact
ccgattccgcggacgcttcatatgtctatgcttggtgtgcgcgacttatctgttattgag
acaccgccagaaaatcgtttcccagtccaaacgtatgtagtagagtataatccagcatta
atgcgagaggcgatagagcgagagcttgcaagaggcggtcaaatttacttcctatataac
cgtgtagaggatattgaaagaaaagcagatgaaatttcgatgttagttccagatgctcgc
gtaacgtacgcacatgggaaaatgaacgaaagtgaattagagtctgttatgctatcattt
ttagaaggacagcatgatgttcttgtaagtacaacaattattgagacgggtgtagatatt
ccgaacgtaaatacgttaattgtatttgatgcagatcgtatggggttatcacagttgtac
cagcttcgtgggcgtgttggacgttctaatcgtgttgcatatgcatactttgcctataaa
cgtgacaaagtgctgtcagaagttgcagagaagcgtctgcaagcaattaaagagttcaca
gaacttggatctggtttcaaaattgcgatgagagatttatctattcgtggagcaggtaat
ttgttaggagcagaacagcatgggtttattgattctgtcggatttgatctatattctcaa
atgttaaaagatgcaattgaacagcgaagaggaacagatggagctgaaaatacagttaat
gttgaaattgacttagaggtagatgcatacttaccagatgcttatatttcagatagtaag
caaaaaattatgatgtataaacaatttagaggtgtttctgcaattgaggatattgaagaa
ttgcaggaagaaatgatcgatagattcggtgattacccacaagaagttggttatttatta
caaattgcaaatattaaagtgttggcaatgaaagaacaaattgagttaattaagcagaat
aaatttgaagtaacattcctgttttctgaacaagcaagtcaaaatattgatggtggaaaa
ttattcatgctcggaaatagttttgggcgtatgattggtctaggaatggaaggatcacaa
ttgaaaattgttatgaaaacaaatggcttagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcttaccagatgtgaaaaaagaagtaataaatgcctaa
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