Bacteroides thetaiotaomicron VPI-5482: BT_1455
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Entry
BT_1455 CDS
T00122
Name
(GenBank) protein rtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bth
Bacteroides thetaiotaomicron VPI-5482
Brite
KEGG Orthology (KO) [BR:
bth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bth03016
]
BT_1455
Enzymes [BR:
bth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BT_1455
Transfer RNA biogenesis [BR:
bth03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BT_1455
Prokaryotic type
tRNA splicing ligases
BT_1455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAO76562
UniProt:
Q8A7R9
LinkDB
All DBs
Position
complement(1792275..1793672)
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AA seq
465 aa
AA seq
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MGIRLKDLSKLGYRDNVARSLVVDIVGKYCKHDTKEQIAMTLSNILEHPESYKNNEIWSK
LAERLSPTVLAKEFVAYDLREDPLMYKTYGGKFIETLAKQQMNLAMRLPVTVGGALMPDA
HAGYGLPIGGVLATDNAVIPYAVGVDIGCRMSLTVFDAKADFLKRYSYQIKEALKDFTHF
GMDGGLGFEQEHEVLDREEFRLTPLLKDLQGKAVRQLGSSGGGNHFVEFGEIALQADNVL
NLPEGSYVALLSHSGSRGLGAAIAKHYSLLAREVCKLPREAQHFAWLSLDSEEGQEYWMS
MNLAGDYARACHERIHLNLSKALGLKPVANVNNHHNFAWKEEIAPGRMAIVHRKGATPAQ
KGQAGLIPGSMATAGYLVCGKGVEESLCSASHGAGRAMSRQKAKESFTQSALKKMLSQAD
VTLIGGSIEEIPLAYKDIDRVMYTQETLVEVQGRFMPRIVRMNKE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgggaatacgattaaaagatttaagtaaactgggatatcgggataatgtagcccgtagt
ctggtagtagacattgtaggcaaatattgcaaacatgacacgaaggaacagattgcaatg
actttgagcaatatactcgaacatcccgaatcttataaaaacaatgaaatatggagtaag
ctggcggaacgcctgtcgcctactgttcttgcgaaagagttcgtagcttacgacttacgg
gaagatccgttgatgtataaaacctatggaggtaagtttatcgagactcttgccaaacaa
cagatgaatttggctatgcgcctgcctgtaacggtcggcggagcgttgatgcccgatgcg
cacgccggttatggattgcctatcggtggggtactggctactgataatgccgtgataccg
tatgctgtcggggttgatatcggttgccggatgagtctgacggtatttgatgcgaaagca
gacttcctgaaacgatattcttatcagataaaggaggctttgaaagactttacacatttc
ggaatggatggcggcctgggctttgaacaggagcatgaagtgctggatcgggaagaattt
cggttgactcctttattaaaggatttgcagggaaaggccgtgcggcaactcggaagctcc
ggaggtgggaatcactttgtggagttcggcgaaattgctttgcaggcggataatgtgctg
aatcttccggaggggagttatgttgctttgctgtctcattccggttcacgtggcttgggt
gctgctattgccaaacattacagtctgttggcccgtgaagtctgcaaacttcctcgggag
gcgcagcattttgcgtggctgagtctggactccgaagaagggcaggagtattggatgagt
atgaatctggcaggagactatgcccgtgcctgtcacgagcgtattcacttgaatctatct
aaagcattgggactgaaacctgttgcgaatgtcaacaaccatcacaactttgcgtggaaa
gaggagatagctccgggacgtatggcgattgtgcatcgcaaaggggcaactcctgcacaa
aagggacaggcgggtctgattcccggaagtatggctacggcaggttatctggtttgtggc
aaaggggtggaagaatccttgtgctctgcttctcatggagccggaagagcgatgtcccgg
caaaaagcaaaggagagtttcactcagtcggctttgaaaaagatgctgtcgcaggcagac
gtgacattgataggcggaagtatcgaggaaatacctctggcatataaagacatcgaccgc
gtgatgtacacacaggagactttggtggaagtgcagggtagatttatgcctcgcatcgta
cgaatgaataaagaataa
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