Bacteroides thetaiotaomicron VPI-5482: BT_1595
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Entry
BT_1595 CDS
T00122
Name
(GenBank) transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
bth
Bacteroides thetaiotaomicron VPI-5482
Pathway
bth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BT_1595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bth03021
]
BT_1595
03019 Messenger RNA biogenesis [BR:
bth03019
]
BT_1595
Transcription machinery [BR:
bth03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BT_1595
Messenger RNA biogenesis [BR:
bth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BT_1595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
OB_RNB
AT_hook
Motif
Other DBs
NCBI-ProteinID:
AAO76702
UniProt:
Q8A7C9
LinkDB
All DBs
Position
1961136..1963304
Genome browser
AA seq
722 aa
AA seq
DB search
MYNIIQLNDKNLSELQVIAKELGIKKADSFKKEELVYKILDEQAIAGATKKVAAEKLKEE
RKGDKNKRSRTAAPKKEEKVAPAAKNAEVTKNKENAPAAKPQQQPKEEAANKAKEAPVAE
PKAEKAAPKRKVGRPRKDANIAEKAENKEVENAKPIVKPTEEKAVAEKTVVAPAAEKATP
TQETEKKVKENKPAVAEKPVIAKPQKKSAPVIDEESTILSSEDDDDFIPIEDLPSEKIEL
PTELFGKFEATKAETAQAAPEQAPQPQQQQHSQPQQRQRIVRPRDNNNNAGNNNVNANNN
NNFQRNNNNNQRPPMQQRPAQQQNNVAENLPAVQQQPERKVIEREKPYEFDDILSGVGVL
EIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGIIRPPKEGEKYFPLVK
VSKINGRDAAFVRDRVPFEHLTPLFPDEKFRLCKGGYSDSMSARVVDLFAPIGKGQRALI
VAQPKTGKTILMKDIANAIAANHPEVYMIMLLIDERPEEVTDMARSVNAEVIASTFDEPA
ERHVKIAGIVLEKAKRLVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGVDANALHK
PKRFFGAARNIENGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRNLSNKRIFP
AVNITASSTRRDDLLLDKTTLDRMWILRKYLADMNPIEAMDFVKDRLEKTRDNDEFLMSM
NS
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtataacattatccaattgaacgacaaaaatctgtcggaacttcaagttattgccaaa
gagctaggcatcaaaaaagcagactcatttaagaaagaagaacttgtatacaagattctt
gatgagcaagccatagccggagccactaagaaagttgccgcagagaaattaaaagaagaa
cgcaaaggagataaaaacaagcgttcgcgcacagccgcacctaaaaaagaagagaaagta
gcacctgcagccaaaaatgcggaagttactaaaaataaagaaaatgctcctgcagccaaa
cctcagcaacagcctaaagaagaggctgccaacaaagccaaagaagctcccgttgctgaa
ccgaaggcagagaaagctgctcctaagcgcaaagtaggccgtccccgcaaagacgccaat
atcgctgaaaaagcagaaaacaaggaggtggaaaacgcaaaaccgatagtgaaaccaaca
gaagaaaaagctgttgcggaaaaaacggtagttgcaccggcggctgaaaaagcaactccg
acacaggagacagaaaagaaagtaaaagaaaacaaacctgccgttgcagaaaaaccggta
atagccaaaccgcaaaagaaatcggcaccggtgatcgacgaagaaagtaccatcttatcc
agcgaagacgatgatgactttatcccaatcgaagacctgccttctgaaaaaatagagctt
ccgaccgaactcttcggcaaattcgaagcgaccaaggcagaaacagcacaagccgccccc
gagcaagctccacaaccacagcaacaacagcattcacaaccgcaacaacgccagcgcatt
gtccgcccacgcgacaacaataacaacgccggcaataacaatgtaaatgctaacaacaat
aataatttccagcgtaataataacaacaaccagcgtcctccgatgcaacaacgtcctgca
caacagcagaacaacgttgccgagaaccttccggctgtacaacaacagccggaacgcaaa
gtgatcgagcgtgaaaagccttatgaattcgatgatatcctcagcggagtaggcgtactg
gaaatcatgcaggacggatacggattcctccgttcttccgattacaattatctttcttct
ccggacgatatttatgtatcacagtcacaaattaagttatttggtcttaagaccggtgac
gtggtagaaggcatcatccgtccgccaaaggaaggagaaaaatatttcccgttagtaaag
gtgtcaaagatcaacggacgtgacgcagctttcgttcgcgaccgtgttcctttcgaacac
ttgactccgctcttcccggacgagaaattcagactctgcaaaggcggttattcagactcc
atgtctgcccgggttgtagaccttttcgctcctatcggtaagggacagcgtgcactgatc
gtagcacagccgaagacaggtaagaccatcttgatgaaagatatcgccaacgccatcgca
gccaatcatccggaagtatatatgattatgctgctgatcgacgaacgtccggaggaagta
accgacatggcacgcagcgtcaacgcagaagtaatcgcttctacttttgacgaaccggca
gaacgccacgtaaaaatcgcaggtatcgtactcgagaaagcaaaaagactggtagaatgc
ggacacgacgtagtgatcttccttgactctatcactcgtctggcacgtgcttacaatact
gtatctcccgcatccggtaaagtactttccggtggtgtggacgccaatgcacttcacaag
cccaaacgcttcttcggtgctgcccgtaacatcgaaaacggcggttcgctgactatcatc
gctaccgcactgatcgacaccggttccaaaatggacgaagttatcttcgaagaattcaaa
ggtacaggtaacatggagttgcagcttgaccgcaacctgtccaacaagcgtatcttccct
gctgtcaacatcaccgcatccagtactcgtcgcgacgatctgctgcttgacaagacaaca
ctcgaccgcatgtggatattacgcaaataccttgcagatatgaatcctatcgaagcaatg
gatttcgtaaaagaccgtctggaaaaaacaagagacaacgacgaattcctgatgagcatg
aatagctga
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