Bacteroides thetaiotaomicron VPI-5482: BT_1885
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Entry
BT_1885 CDS
T00122
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bth
Bacteroides thetaiotaomicron VPI-5482
Pathway
bth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BT_1885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bth03019
]
BT_1885
Enzymes [BR:
bth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BT_1885
Messenger RNA biogenesis [BR:
bth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BT_1885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AAO76992
UniProt:
Q8A6J6
LinkDB
All DBs
Position
complement(2372322..2373446)
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AA seq
374 aa
AA seq
DB search
MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII
QHLHLNKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDM
LHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK
QTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQ
KSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVA
TDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQINDIQ
KLTGKKLNRADFTI
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaattaaatataaccgaacctattttaaaagcaattgaagaaaaagga
tatacagtacctactcctattcaggagaaagcgattcctgtagcattggcaaaaaaagac
attttaggctgtgcgcagactggaaccggaaagactgcttcatttgcaatacctattata
caacatttgcatctcaataagggagagggcaagcgttcggaaatcaaagctctgattttg
actcctacccgcgaactcgcattgcaaatcagtgaatgtattgaagattattcaaagtat
acacgtatccgtcacggagtcatcttcggaggcgtgaatcaacgtccgcaagtggatatg
ctgcataaaggaattgatattctggttgctactccggggcgtctgctcgatttgatgaat
caaggacatatacgattggataatattcagtattttgttctggacgaagcagaccgtatg
cttgatatgggctttattcatgatattaaacggatattgccgaagcttccgaaagaaaag
caaacgttgttcttttcggctacgatgcctgatacgattattgctctgactaattccttg
ttgaagaatccggtgaagatttatgttacaccgaaatcatcaacggtagattctataaag
cagttggtttactttgttgagaagaaagaaaagagcctgttgctgatttcaattttgcaa
aaatcggaggaccggtcggtacttatcttttcgcgtaccaagcataatgctgataagata
gttaaaatattgggtaaagccggcattggcagccaggctattcatggaaataagagtcag
gcggcacggcagtccgcattgggtaacttcaagtcgggtaagacgcgagtgatggttgct
actgatatcgcttcccggggaattgatattaatgaactgccgttggttatcaattatgat
cttcctgatgttcccgagacatatgtacaccgaatcgggcgtacgggaagagctggaaat
gcaggtatggcacttacattctgctctcaggaagaacgcaaacagattaatgatattcag
aaattgacaggcaaaaaactaaatagggctgattttacaatttaa
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