Bacteroides thetaiotaomicron VPI-5482: BT_2734
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Entry
BT_2734 CDS
T00122
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bth
Bacteroides thetaiotaomicron VPI-5482
Pathway
bth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BT_2734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bth03021
]
BT_2734
03400 DNA repair and recombination proteins [BR:
bth03400
]
BT_2734
Enzymes [BR:
bth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BT_2734
Transcription machinery [BR:
bth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BT_2734
DNA repair and recombination proteins [BR:
bth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BT_2734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AAO77840
UniProt:
Q8A469
LinkDB
All DBs
Position
complement(3386937..3390749)
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSNTVNQRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKNEGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
FLGPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQSVHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKRVLGRK
LAARVLKTWIEDFVDEDTGEVVSIERNEVIIDRETVLEEVHIDEILESGVQNILLHKDEP
NQSDFSIIYNTLQKDPSNSEKEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGD
VGRYRINKKLNLTTDMDVRVLTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQ
LSNQFAVGLARMSRTIRERMNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTN
PLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFA
KINELGFIETPYRKVENGKVDLSDNGLVYLTAEEEEEKIIAQGNAPLNDDGTFVRNKVKS
RQDADFPVVEPSEVDLMDVSPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSE
APIVGTGIERQLVRDSRTQITAEGDGVVDFVDATTIRILYDRTEDEEFVSFEPALKEYRI
PKFRKTNQNMTIDLRPICDKGQRVKKGDILTEGYSTEKGELALGKNLLVAYMPWKGYNYE
DAIVLNERVVREDLLTSVHVEEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRI
GARIEPGDIMIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKKL
FSRVIKNRSSKLADKALLPKIDDEFESKVADLKRILVKKLMTLTEGKVSQGVKDYLGAEV
IAKGSKFSASDFDSLDFTSIQLSNWTSDDHTNGMVRDLVMNFIKKYKELDAELKRKKFAI
TIGDELPAGIIQMAKVYIAKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDI
VLNPLGVPSRMNIGQIFEAVLGRAGKTLGVKFATPIFDGATMDDLDQWTDKAGLPRYCKT
YLCDGGTGEQFDQAATVGVTYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEGFGAAHILQEILTIKSDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHEL
RGLGLSINLE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatactgtaaatcaaagagttaattttgcttcgactaagaatccgcttgaa
tatccggatttcctggaagtacaattgaagtcattccaagactttctacaattagatacc
ccacctgaaaagcgcaagaatgagggtttgtataaagtatttgctgaaaacttccctatt
gccgatacaagaaacaattttgttcttgagtttttggattattatattgatccgccgcgc
tataccatcgatgattgtatagagcgtgggctcacatatagtgttcctttgaaagcgaaa
cttaagctgtactgtaccgaccccgatcacgaggattttgatacagttattcaggacgta
ttcctcggcccgatcccttacatgactgataaggctactttcgtcattaacggtgccgaa
cgtgtagttgtgtcacagcttcaccgttctccgggtgtgttcttcggtcagagtgtacat
gccaatggtacgaaactttactcggctcgtattattccgtttaaaggttcgtggattgag
tttgctaccgacatcaataatgtgatgtacgcatacatcgaccgtaagaagaaattgccg
gtaactactttgttacgcgcgattggtttcgagaacgataaggatattcttgagattttc
aaccttgcagaagatgttaaggtaaacaaaacaaatctgaagagagttctgggtcgtaag
ttagctgcacgtgttttgaaaacatggattgaagatttcgttgatgaagataccggtgaa
gtggtttctatcgaacgtaacgaggttattatcgaccgtgaaaccgtactggaggaagta
catattgatgaaattctggaatcgggagttcaaaacatccttttgcataaggacgagccg
aatcaatctgatttctctattatatataatactctgcagaaggacccgagtaactcggaa
aaagaagctgtgttgtatatctatcgtcaattgcgtaacgctgatccggccgatgatgca
agtgcacgtgaagttatcaacaacttgttcttctcagaaaaacgatatgaccttggtgat
gtaggtcgttacagaatcaacaagaaactgaatctgacgactgatatggacgtgcgtgtc
ctcacgaaggaagatatcattgaaatcatcaaatatctgattgagttgattaattcaaaa
gcagatgtggatgatattgaccacttgagcaaccgtcgtgtacgtacagtaggtgaacag
ctttctaaccagtttgctgttggtttggctcgtatgtctcgtacgattcgtgaacgtatg
aacgttcgtgacaatgaagtatttactccgattgatttgatcaatgcgaagactatttct
tctgtgatcaattctttttttggaacaaatgctttgtcacagttcatggaccagacaaac
ccgttggctgaaattacgcacaagcgccgtatgtctgccctaggtcctggtggtctttct
cgtgaacgtgccggatttgaggttcgtgacgttcactatacacactacggtcgtctttgt
ccgattgagactcctgaaggtccgaatatcggtttgatttcttccttgtgtgtattcgct
aaaattaatgagctgggattcattgaaactccgtaccgtaaggtggaaaacggaaaagtg
gatctttccgataatggtctggtttatctgactgctgaagaagaagaagaaaagattatt
gcacagggtaatgctccgttgaatgatgacggtacatttgttcgcaataaagttaaatct
cgtcaggacgctgacttcccggttgtagaaccgtctgaagtagatttgatggacgtttct
cctcagcagattgcatcgattgctgcttcactgattccgttcctggaacatgatgatgct
aaccgtgcattgatgggatcaaacatgatgcgccaggcagttcctttgttgagaagtgaa
gctccgattgtaggtacaggtatcgaacgacagttagtgagagactctcgcacgcagatt
actgcagaaggcgatggtgttgttgacttcgttgatgctactacgatccgtattttgtat
gaccgtacagaggacgaagaatttgtaagcttcgagcctgctttgaaagaatatagaatt
ccgaagttccgtaagacgaaccagaacatgactattgacttgcgtccgatttgtgacaaa
ggtcagcgcgtgaagaagggtgacatcctgactgaaggttattctaccgaaaagggtgaa
ttagctttgggtaaaaacctgttggttgcttatatgccatggaagggatataactatgag
gatgctatcgtattgaacgaacgcgtggttcgcgaggacttgttgacttctgttcacgta
gaagaatactctctggaagttcgtgaaacgaagcgtggtatggaagaattgacttctgat
attccgaatgtaagtgaggaagctactaaagacctggatgaaaatggtatcgtaagaatc
ggtgcgcgtatcgaaccgggtgatatcatgatcggtaagattactccgaaaggtgaatct
gatccttctccggaagaaaaactacttcgtgctatcttcggtgataaggcaggtgatgtg
aaagatgcttctttaaaagcttctccttctttgaaaggtgttgttattgataagaaactt
ttctcacgtgtaatcaagaaccgtagctctaaactggcggataaagcattgttgcctaag
attgacgatgagtttgaatcaaaggttgcagacttgaagcgtattctggttaagaaactg
atgactttgactgaaggcaaggtttctcagggtgtgaaagactacttaggagcagaagtt
attgctaagggatctaagttcagtgcttctgattttgattcacttgactttacttctatt
cagctgagtaactggactagtgatgaccatactaatggtatggttcgtgatctggttatg
aactttatcaagaaatacaaagagctggatgctgaattgaagcgtaagaagtttgctatc
actatcggtgatgaacttccggctggtatcattcagatggctaaagtatatattgctaag
aaacgtaagattggtgtaggtgataagatggcaggtcgtcacggtaacaagggtatcgtg
tcacgtgttgtgcgtcaggaagatatgccgttcttggcagatggtactccggttgacatt
gtactgaatccgttgggtgtgccttctcgtatgaacattggtcagatttttgaagctgta
ttaggtcgtgccggaaaaactttgggcgtgaaatttgcaactcctatttttgacggtgct
acgatggacgacttggatcagtggacagacaaagcgggattgccacgttactgtaaaact
tatctttgtgatggtggtacaggtgagcaatttgaccaggcagcaaccgtaggtgtgact
tatatgctgaagctggggcacatggttgaagacaagatgcacgctcgttctatcggtccg
tactcattgattactcagcaacctcttggtggtaaagcacagttcggtggtcagcgtttc
ggagaaatggaggtttgggcactcgaaggcttcggtgctgctcatatcctgcaggaaatc
ttgactattaagtctgacgacgtagtaggacgttctaaggcttatgaagcaattgtgaaa
ggtgaaccgatgccgcaacccggtattccggaatccttgaacgtattgttacacgagttg
agaggtttaggtttgagtatcaacctagaataa
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integrated database retrieval system
