Bacteroides thetaiotaomicron VPI-5482: BT_3303
Help
Entry
BT_3303 CDS
T00122
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bth
Bacteroides thetaiotaomicron VPI-5482
Pathway
bth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BT_3303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bth03019
]
BT_3303
03009 Ribosome biogenesis [BR:
bth03009
]
BT_3303
Enzymes [BR:
bth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BT_3303
Messenger RNA biogenesis [BR:
bth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BT_3303
Ribosome biogenesis [BR:
bth03009
]
Prokaryotic type
rRNA helicases
BT_3303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
RecG_N
Motif
Other DBs
NCBI-ProteinID:
AAO78409
UniProt:
Q8A2K2
LinkDB
All DBs
Position
complement(4240031..4241974)
Genome browser
AA seq
647 aa
AA seq
DB search
MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LLQQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK
RGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNT
LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREIERI
IGKKFIAGEMPTGKQICEKQLIKVIDELEKVKVNEEEITDFMPEIYRKLEWLSKEDLIKR
MVSHEFNRFLDYYRDREEIETPTDSRERNTRDSRERGSRKAAPGFTRLFINLGKMDSFFP
SELISLLNSNTRGRIELGRIDLMKNFSFFEVEEKEAQNVVKALNRANWNGRKVSVEVAGE
EAGEGRRGSGSAERRGGKRPFGSSSEKRSDSSRNSRSERSDRAPRADRATKGSDKTDKKK
RSDKPSREERGYGARGPKKTDDWQQFFKDKEPDFSEEGWARRKPKKK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagagcttggcgtttctccggagatacgtaaagcaattgaagagatg
ggatatgagaatcccatgccggtacaagaggaagtgattccgtaccttttaggagaaaat
aatgatgtagtagctcttgcacaaactggaacaggtaaaacagccgcattcggcctgcct
ctgctccaacagattgacgtaaagaacagggttccccagtcactaatactttgccccacc
cgtgagctatgcctccagatagcgggcgatctgaacgattactcaaaatacattgacgga
ctgaaagtactgccagtttacggcggttcttccatcgacagccagatacgcagcctgaaa
cgcggcgtacatatcatcgtggccacaccgggacgactgctcgacctgatggagcgcaaa
accgtatctttatcgaccgttcacaacatagtgatggacgaagcggacgaaatgctgaat
atgggattcaccgacagcatcaacgctatccttgccgatgtccccaaagaacggaacacc
ttgctcttctcggcaaccatgagccccgaaatcgcccgcatctccaagaactacttgcag
aatgccaaggagattaccatcggacgcaagaacgaaagtacaagcaatgtgaaacacgta
gcttataccgtacaagccaaagacaaatatgcagccctgaaacgcattgttgactattac
ccgcaaatatatggtatcattttctgccgtacccgtaaagaaacgcaggaaatagccgat
aaattgatgcaggaaggctataacgcagattcactgcacggagaactgtcacaggctcag
cgcgatgccgtgatgcagaaattccgcatccgcaacctgcaattactggttgctacggac
gttgccgcacgcggactggacgtagacgacctgacacacgtgatcaactacggcctgccc
gatgatacggaaagctacacacatcgtagcggacgtaccggacgtgccggaaagacaggt
acttccatcgctatcatcaacctgcgcgaaaaaggaaagctgcgtgagatagagcgcatc
atcggcaagaagtttattgccggagaaatgccgacaggcaagcagatctgcgaaaaacag
cttatcaaagtgattgatgaactggaaaaggtgaaggtaaacgaagaagaaatcacggac
ttcatgccggagatttatcgtaagctggaatggctgagcaaagaggatctgatcaaacgc
atggtatcgcatgagttcaatcgttttctggactactaccgcgaccgtgaagagatcgag
actccgaccgacagccgcgaacgtaacacacgtgacagccgtgaaagaggcagccgcaag
gcagcgccgggtttcacccgcttattcatcaatctgggaaaaatggacagtttcttccca
agcgaactgatcagcttgctgaacagcaatacacgtggacgaatcgagttgggacgcatt
gacttgatgaaaaatttctccttcttcgaagtagaagagaaagaagcacaaaacgtagtg
aaggcgttgaaccgcgctaactggaacggccgcaaagtatctgtagaagttgccggtgag
gaagcaggagaaggtcggagaggcagtggttctgccgaacgcagaggaggaaaacgtcct
ttcggaagttcctccgaaaagcgtagtgacagtagccgcaactcacgttccgaaagatcg
gacagagcaccgcgagctgacagagcgactaaaggcagtgacaagaccgacaagaaaaaa
agaagcgacaagcccagccgcgaagaacggggttacggagcacgtggtcctaaaaagaca
gacgactggcaacagttctttaaagataaagagcctgacttcagcgaggaaggatgggca
cgcagaaagccgaaaaagaagtaa
DBGET
integrated database retrieval system
