Burkholderia thailandensis E254: BTN_3226
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Entry
BTN_3226 CDS
T03380
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bthe
Burkholderia thailandensis E254
Brite
KEGG Orthology (KO) [BR:
bthe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bthe03019
]
BTN_3226 (hrpA)
Enzymes [BR:
bthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BTN_3226 (hrpA)
Messenger RNA biogenesis [BR:
bthe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BTN_3226 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
NACHT
T2SSE
AAA_19
nSTAND3
AAA_23
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AIT20480
LinkDB
All DBs
Position
1:complement(3645543..3649445)
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AA seq
1300 aa
AA seq
DB search
MSGKRDEIARAIAAHQVVIVCGETGSGKTTQLPKICLALGRGVGAGGAGLIGHTQPRRLA
ASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMTDGILLAESQTDPLLKAYDTL
IIDEAHERSLNIDFLLGYLKQILPRRPDLKLIVTSATIDADRFARHFGSDERPAPVIEVS
GRLYPVEVRYRPIADDRPAAVRHAEGAASGRDRAKSAREAERDLMDGIVDAVDELCREGP
GDVLVFLPGEREIRDAAESLRKHHPPHTEILPLFARLSAAEQERVFKASNARRIVLATNV
AETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIESISQAAANQRAGRCGRVADGICIR
LYEESDFAGRARFTDPEILRSSLASVILRMKSLHLSAIESFPFIEPPPGRAIADGYQLLN
ELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQQALREVLVIASALSVQDPRDRPI
DAQEQADQAHRRFADERSEFLQWLRIWAWFEEAVAHKKSNRQLVDACRQHFLSHLRLREW
RDVHSQLLTVVREHGWRLNEADATFEQIHLSLLTGLLGNIGFKAEDEPHYLGARGIKFHL
WPGSALVKKAGRWVMAAELVETSRLYARCIAKIEPEWIERIGAHLLKKSLSEPHWEKRPA
QVTAFERATLYGLTVYHRRRVAFGRQDPARARELFIRGALVDGEFDTKLAFFAHNRKLLA
DIEQLEHKSRRQDVLVDDELIHAFYDQAIPSGIHTGAAFERWYRDEVKKSGQPEDKLRLL
YLSRDDLMRHEAAGVTTDLFPKRATMAGVEMALTYHFEPGSPRDGVTLAVPLFALNQVDA
RRAEWLVPGMLKEKAHLLLKSLPQKLRRHCVPLPEYAAGFVERAGRERFGAGGLVDALIA
DVRERTQVATKTSDFKLETLPAHLFMNFKVIDEHGRQLAMGRNLAQLRAELGAQAQQHFQ
KIAAAATLAPAGAPSGAAAAEAPAGGARPRGAQGGGATPAVAPSAAQAGAAAAGATALYE
NLTTWNFGKLPELLEIRRRGETLFGYPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFA
LQLKEPIKYLEKNLPGLREMAMQYMSLGTQDELRDQLIATALDRACLQDPLPADDASFHA
RRDEGRSRLNLLAQEIARLVGQILAEYAGLAKKLAQAKPFPAAHADLQGQLAALVGKRFV
IDTPYAQLAHFPRYLKGIALRIDKLKADPARDARQAAELQPLAQHYQRSIVQRGGVADAR
LAEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgggcaagcgcgacgagatcgcgcgcgcgatcgccgctcaccaggtcgtgatcgtc
tgcggcgagacgggctcgggcaagaccacccagttgccgaagatctgcctcgcgctcggc
cgcggcgtcggcgcgggcggcgcggggctgatcggccacacgcagccgaggcggctcgcg
gcgtcgtcgacgggccgccggatcgccgaggagctcggcacgccgttcggcgaagtggtg
ggctacaaggtgcgcttcaccgacaacctcgcgccgggcgcgtcggtcaagctgatgacg
gacggcatcctgctcgccgagtcgcagaccgatccgctgctcaaggcgtacgacaccctc
atcatcgacgaggcgcacgagcgcagcctgaacatcgattttctgctcggctacctgaag
cagatcctgccgaggcggccggacctgaagctgatcgtcacgtcggcgacgatcgacgcg
gaccgtttcgcgcgccatttcggcagcgacgagcggcccgcgccggtgatcgaggtgagc
gggcggctctatccggtggaagtccgctaccggccgatcgccgacgaccggccggccgcc
gtccggcacgcggaaggcgcggcgtccgggcgcgaccgcgcgaagagcgcgcgcgaggcc
gagcgcgacctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgagggcccg
ggcgacgtgctcgtgttcctgcccggcgagcgcgagatccgcgacgccgccgagtcgctg
cgcaagcaccatccgccgcacaccgagatcctgccgctgttcgcgcggctgtcggcggcc
gagcaggagcgcgtgttcaaggcgtcgaacgcgcggcggatcgtgctcgcgacgaacgtc
gccgagacgtcgctcacggtgccgggcatccgctacgtcgtcgataccgggcttgcgcgc
gtgaagcgctattcgtaccggaacaaggtcgagcagttgcagatcgagtcgatctcgcag
gcggccgcgaaccagcgcgcgggccgctgcggccgcgtcgccgacggcatctgcatccgt
ctctacgaggaaagcgatttcgccggccgcgcgcgcttcaccgatccggaaatcctgcgc
tcgtcgctcgcatcggtgatcctgcggatgaagtcgctgcatctgtcggcgatcgaatcg
tttccgttcatcgagccgccgcccggccgcgcgatcgcggacggctatcaactgctcaac
gagctcggcgcggtcgacgacgacaacgcgctcacgccgctcggccgcgagctcgcgcgg
ttgccgctcgatccgcgcgtcggccggatgatcctcgccgcgcgcgaccagcaggcgttg
cgcgaagtgctcgtgatcgcgagcgcgctgtccgtgcaggacccgcgcgatcgcccgatc
gacgcgcaggagcaggccgaccaggcgcaccggcgcttcgccgacgagcgctccgagttc
ctccagtggctgaggatctgggcgtggttcgaggaggcggtcgcgcacaagaagtcgaac
cggcaactcgtcgacgcgtgccggcagcatttcctgtcgcacctgcggctgcgcgaatgg
cgcgacgtccactcgcagctcctgaccgtcgtgcgcgagcacggctggcgcctgaacgag
gccgacgcgacgttcgagcagatccatctgtcgctgttgacggggctgctcggcaacatc
ggcttcaaggccgaggacgagccgcactatctcggcgcgcgcgggatcaagttccatctg
tggccgggctccgcgctcgtgaagaaggcggggcgctgggtgatggcggccgagctcgtc
gagacgagccgcctctatgcgcgctgcatcgcgaagatcgagccggaatggatcgagcgc
atcggcgcgcacctgttgaagaaatcgctgtccgagccgcactgggagaagcgtcccgcg
caggtcaccgcgttcgagcgcgcgacgctgtacgggctcaccgtctatcaccggcggcgc
gtcgcgttcggccggcaggacccggcgcgcgcgcgggagctgttcatccgcggcgcgctc
gtcgacggcgaattcgacacgaagctcgcgttcttcgcgcacaaccgcaagctgctcgcc
gacatcgagcagctcgagcacaagtcgcgccggcaggacgtgctcgtcgacgacgagctg
attcacgcgttctacgatcaggcgattccgtccggcatccacacgggcgccgcgttcgag
cgctggtaccgcgacgaggtgaaaaagagcgggcagccggaagacaagctgcgcctgctg
tatctgtcgcgcgacgatctgatgcgccacgaggcggcgggcgtgacgaccgatctgttt
ccgaagcgcgcgacgatggcgggcgtcgagatggcgctcacgtaccacttcgagcccggc
tcgccgcgcgacggcgtgacgctcgcggtgccgctcttcgcgctgaaccaggtcgacgcg
cgccgcgccgagtggctcgtgcccgggatgctgaaggagaaggcgcacctgctgctgaag
tcgctgccgcagaagctgcgccgccattgcgtgccgctgccagagtacgcggcgggcttc
gtcgagcgcgccgggcgcgagcgcttcggcgcgggcggcctcgtcgacgcgctgatcgcc
gacgtccgcgagcggacgcaggtcgcgacgaagacgtccgacttcaagctcgagacgctg
cccgcgcacctgttcatgaacttcaaggtgatcgacgagcacggccggcagctcgcgatg
gggcgcaatctcgcgcagttgcgcgcggagttgggcgcgcaggcgcagcagcactttcag
aagatcgccgccgcggcaacgctcgcgccggcgggcgcgccttccggcgcggccgccgcc
gaggcgcccgcgggtggcgcgcggccgcgaggcgcgcaaggcggcggggcgacgcccgcc
gtcgcgccgtcggcggcgcaagcgggcgcggccgccgccggcgcgaccgcgctttatgag
aacctgacgacgtggaacttcggcaagctgccggaactcctcgagatccgccggcgcggc
gagacgctgttcggctacccggcgctcgtcgaccgcggcacgcactgcgacgtcgaggtg
ttcgactcgcccgacgaggcggcgcgaatccaccgcgcgggcctgcggcgcctgttcgcg
ttgcagctgaaggagccgatcaagtacctggagaagaacctgccggggctgcgcgagatg
gcgatgcagtacatgtcgctcggcacgcaggacgaactgcgcgaccagttgatcgcgacc
gcgctcgaccgcgcgtgcctgcaggacccgctgcccgccgacgacgcgagttttcacgcg
cgccgcgacgagggcaggagccggctgaacctgctcgcgcaggagatcgcgcggctcgtc
gggcagatcctcgccgagtacgcggggctcgcgaagaagctcgcgcaggcgaagccgttc
ccggccgcgcacgcggacctgcagggccagctcgccgcgctcgtcggcaagcgcttcgtc
atcgacacgccttacgcgcagcttgcgcatttcccgcgctacctgaagggcatcgcgctg
cgaatcgacaagctgaaggccgatcccgcccgcgacgcgcggcaggcggccgagctgcag
ccgctcgcgcagcattatcagcgctcgattgtgcagcgcggcggcgtcgcggatgcgcgg
ctcgccgagttccggtggctgctcgaggaactgcggatctcgcttttcgcgcaggaactg
cgcacgccgatgccggtgtcggtcaagcggctctacaaagtgtgggagtcgatgcagcgc
tga
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