Bathymodiolus thermophilus thioautotrophic gill symbiont: MS2017_0456
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Entry
MS2017_0456 CDS
T07716
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bthg
Bathymodiolus thermophilus thioautotrophic gill symbiont
Pathway
bthg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bthg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MS2017_0456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bthg03021
]
MS2017_0456
03400 DNA repair and recombination proteins [BR:
bthg03400
]
MS2017_0456
Enzymes [BR:
bthg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MS2017_0456
Transcription machinery [BR:
bthg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MS2017_0456
DNA repair and recombination proteins [BR:
bthg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MS2017_0456
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
BSH_LcnD
DUF8806
Motif
Other DBs
NCBI-ProteinID:
AYQ56199
UniProt:
A0A3G3IKE6
LinkDB
All DBs
Position
643806..647996
Genome browser
AA seq
1396 aa
AA seq
DB search
MQDLLNILKSQNKEQDFDAIRVGLASPEKIRSWSYGEVKKPETINYRTFKPEREGLFCSK
IFGPMKDFECLCGKYKRMKFRNVVCEKCGVEVTLSKVRRERMGHIDLAAPVAHIWYLKSL
PSRLGLLMDMTLKDIERVLYFEAFLVTDPGSTPMIHKQLLTEEMYYDALDEFGDDEFEAK
MGAEAIQDVLKEMQLEKEAANLREDSLNTKSQTKLKKYNKRLKLIDSLIQSGNKPEWMVL
NVLPILPPDLRPLVSLDGGRFATSDLNDLYRRVINRNNRLARLLELDAPEIIVRNEKRML
QEAVDSLIDNGRRGRAVMGNNRRPLKSIADMIKGKQGRFRQNLLGKRVDYSGRSVIVCGP
YLKLHQCGLPKKMALELFKPFVYNRLISQSLASTIKAAKKMVESEVPEVWDILEKVVHQH
PVMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCGAFNADFDGDQMAVHVPLSEEAQLE
ARTLMLASNNVLHLASGEPIIVPSQDVILGLYYMTRDMINQKGENMIFASATEALNAYES
GAATLHAKVKLRIQDYKKVDNKYQPSATRIVETTVGRAIFSRILPKGLSFDLINKAISKK
VVSNLIHVCYQTQELKDTVIFADQMMYMGFQYSTKSGISFCSNDMTIPDSKASMVDEAQA
QVKEVQKQYSQGVVTDGERYNKVIDIWSRTSETVAKAMMDEIGFDDFVNAKGETEKLPSF
NSVYMMADSGARGSPAQMRQLAGMRGLMAKPDGSIIETPITSNFREGLNNMQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVVNKEDCGTENGLIMKATIEGGNIVQTLGAAV
LGRVMVEDVMVPDSTEILLPKGHLVTLEDSDRINEVGVESITARSTITCEARYGVCASCY
GNDMARGHKIGVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASASATVSSININNDGVVH
FENLKSITNASGDLVVVSRSSEVTIRNIKGQEVERYKIPYGAIAHVQDGGKVKAKDKIAD
WDPHTHPIISEQAGRVVFVDFVEGVTVNKNTDPLTGLTFFEMIKEGERVSAAKGLKPMIK
MVDTKDSEVMLSTHYLPSEVKINLEDGQVITAGEVLAKISKDQSKTSDITGGLPRVADLF
EARKAKDHSILAEATGVVSFGNPTKSKERLIITSEEGEAIEMMIHKWRQINVFDGETVEK
GDVISDGPSNPHDILRLLGVEALASYVVKEVQNVYRLQGVNISDKHIEVIVKQMLRKVEV
LDIGDSKFVNGETAEYARVIDTNKQLIAQGKDPVIYQRLLMGITKASLATESFISAASFQ
ETTRVLTEASTTGRVDDLLGLKENVIVGRLIPAGTGFVHHQERRSKRAKSIMQASEVEAA
LSAELNEVATETSTKE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatttattaaatattttaaaaagtcagaataaagaacaagattttgacgcaatt
agagttggtttagcctcccctgaaaaaattcgttcttggtcgtatggtgaggtaaaaaaa
cctgaaaccattaactacagaacttttaagcctgagcgtgaaggtttattctgttctaag
attttcggaccaatgaaggattttgagtgtttgtgtggtaaatacaagcgtatgaaattt
cgcaatgttgtgtgtgaaaaatgtggcgttgaagttactttgtctaaagtgcgtagagag
cgtatgggtcatattgatttagcggcacctgttgcacatatttggtatttaaaatcattg
ccatcgcgtcttggattgttgatggatatgacgctaaaagatattgagcgtgttttgtat
tttgaagcctttttggttactgatccaggttcaacaccgatgatacacaagcagttgttg
acagaagagatgtattatgatgccttagatgaatttggcgatgatgaatttgaagcaaaa
atgggtgcagaagcaatccaagatgttttgaaggaaatgcaacttgaaaaagaagcggca
aatttgcgtgaagacagtttaaacaccaaaagtcaaaccaagcttaaaaagtataacaag
cgtttaaaattgattgattctttgattcaatcaggcaataagcctgaatggatggtgctt
aatgtgttgccaattctcccacctgatttgcgtccattggtgtcgttagatggtggtcgt
tttgcaacttctgatttgaatgatttgtatcgtcgtgtaattaatcgtaacaatcgttta
gcgcgtttattagaattagacgcacctgaaattattgttcgtaacgaaaaaagaatgttg
caagaagcagttgattcattgattgacaatggtcgtcgtggccgtgcagtaatgggcaat
aaccgtcgtccacttaaatcaattgccgatatgattaagggtaaacaaggtcgtttccgt
caaaacttattgggtaaacgagttgactattcaggtcgttcagtcattgtttgtggtcct
tatcttaaattacaccagtgcggattgccaaagaaaatggcattggaattattcaagcca
ttcgtttacaaccgtttgatttcacaaagtttggcttcaacgattaaagcagcgaaaaaa
atggttgaatcagaagtgcctgaagtttgggacattttagaaaaagtggtacaccagcat
cccgtgatgttaaaccgtgcaccaactttacaccgtttaggtattcaagcatttgagccg
ttattaattgaaggcaaggcgattcaattacatccacttgtttgtggtgcatttaatgct
gactttgatggtgaccaaatggcagtacatgtgccgttatctgaagaagcgcaacttgaa
gcaagaaccttgatgctagcatctaacaatgtattacaccttgcaagtggtgagccgatt
attgtgccttcacaggatgttattttgggcctttactatatgacgcgtgatatgatcaat
caaaaaggtgaaaatatgatttttgccagtgcaactgaagcacttaatgcgtatgagtca
ggtgcagctactttgcatgcgaaggttaaattgcgtattcaagattacaagaaagttgac
aataaatatcagcctagcgctacgcgtattgttgagacaacagtaggtcgtgcaattttc
tcaagaattttgccaaaaggattgtcatttgatttaattaacaaggccattagtaagaaa
gtggtttctaacttaattcatgtttgttaccaaacgcaagaattaaaagacaccgttatt
tttgcggaccaaatgatgtatatgggtttccaatattcaaccaagtcaggcatttcattt
tgttcaaatgatatgacaattccagatagcaaggcctctatggttgacgaagcgcaagcg
caagtcaaagaagtgcaaaaacaatattcacaaggtgtggtaacagatggtgagcgttat
aataaggtgattgatatttggtcaagaacttctgaaaccgttgctaaggcaatgatggac
gaaattggctttgatgactttgttaatgccaaaggcgaaactgaaaaacttccttctttt
aactccgtttatatgatggctgattctggtgctcgtggttcacctgcacagatgcgtcag
ttagcaggtatgcgtggtttgatggcaaaaccagatggttcaattattgaaaccccaatt
acctcaaactttcgtgaaggtttgaataatatgcaatactttatttcaacacacggtgct
cgtaaaggtctagcagacacagcattaaaaacagcaaactcaggttatttgacgcgtcgt
ttggttgatgttgcacaagacttggttgttaataaagaagattgtggcacagaaaatggt
ttgataatgaaggcaactattgaaggtggcaacattgtacaaacattaggcgccgcagtt
ttgggtcgtgttatggttgaagatgtcatggtgccagattcgacagaaatattgttacct
aaaggtcatttggtcacattagaagactcagataggattaatgaggtgggtgtggaatct
atcacagcacgctctactattacttgtgaggcgcgttatggcgtatgtgcttcttgttat
ggtaatgatatggcgcgtggtcataagattggcgttggtgaagcagttggtgttattgca
gcacaatcaattggcgaacctggcacacagttaacaatgcgtactttccacattggtggc
gctgcttctgcatcggcgacggtaagtagtatcaatattaataatgatggtgtggtgcat
tttgaaaaccttaaatccattactaatgcaagtggagatttggtggttgtttctcgctct
tctgaagtgactattcgtaatataaaaggtcaagaagttgagcgttacaagattccttat
ggtgcgattgctcatgtccaagatggaggtaaagttaaagcaaaagataagattgcagat
tgggatcctcacacgcatccgattatttctgagcaagcaggtcgtgttgtttttgttgat
tttgttgaaggtgtaacggttaacaaaaacacagacccattaacaggattaactttcttc
gaaatgattaaagagggtgaaagggtatcggcagcaaaaggcttgaagccaatgattaaa
atggttgacacaaaagactctgaagttatgttgtcaacacactacttaccatcagaagtt
aagattaatttagaagacggccaagtgattaccgcaggtgaagttctggcaaaaatctct
aaagatcagtctaaaaccagtgatattacgggtggtttgccacgcgttgctgatttgttc
gaagcgcgtaaagcgaaagaccactctattcttgcagaagcaacaggtgttgtgagtttt
ggcaatccaacaaaatctaaagagcgtttgattatcacttctgaagaaggtgaagcgata
gaaatgatgattcacaaatggcgtcaaattaatgtttttgacggtgaaaccgttgaaaaa
ggtgatgtgatttctgatggaccatcaaatccgcacgatattttgcgtttattgggcgtg
gaagcattggcaagctatgtggttaaagaggtacaaaatgtttaccgcttacaaggtgtg
aacatctctgataagcacattgaagtcattgttaagcaaatgttgcgcaaagtagaagtg
cttgatattggtgattctaaatttgtgaatggcgaaactgctgaatatgctcgtgtgatt
gatactaataagcaattgattgcacagggtaaagacccagtgatttatcaaagattgtta
atgggtattaccaaggcatcattggcaacagaatcgtttatttctgcagcatcgttccaa
gaaactacgcgagtattgactgaggcctcaaccacaggccgtgttgatgatttactagga
ttgaaagaaaatgttattgttggtcgtttaattccagcaggcacaggttttgtccatcat
caagagcgtcgttctaagcgtgcaaaaagtattatgcaagcatcagaagtagaagcggca
ctttcagctgagttaaatgaagtggcaacggaaacatctactaaagaatag
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