Bathymodiolus thermophilus thioautotrophic gill symbiont: MS2017_0856
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Entry
MS2017_0856 CDS
T07716
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bthg
Bathymodiolus thermophilus thioautotrophic gill symbiont
Pathway
bthg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bthg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MS2017_0856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bthg03019
]
MS2017_0856
03009 Ribosome biogenesis [BR:
bthg03009
]
MS2017_0856
Enzymes [BR:
bthg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MS2017_0856
Messenger RNA biogenesis [BR:
bthg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MS2017_0856
Ribosome biogenesis [BR:
bthg03009
]
Prokaryotic type
rRNA processing factors
MS2017_0856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AYQ56578
UniProt:
A0A3G3ILI4
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All DBs
Position
complement(1145810..1148197)
Genome browser
AA seq
795 aa
AA seq
DB search
MNHILINATHSEEVRVAIVKNKKLTSLNIETSLNQKNKGNIYKGRISRVEQSLEAAFVDY
GKDKQGFLPFKEVAETLKENAKASGDKLTISDVLKEGQEIIVQVEKEERGNKGAALSTYT
NLAGAYMILTPNNAKSNGISRQITSTDRQSLKEIIGKIVMPENSGLIIRTAGSGKNLEEL
QWEVDYLSELWKSINAAAENRKAPFLIYQESDIVIRTLRDYLREDTDSVIIDDLATFQNA
KEFVSFVLPHYIDRIKHFDSSGHSLFNHMDVESQVKSVFEREVSLRTGATIVFDPTEALT
AIDINSARATKGADIEETAYNTNLEAAKEIAAQLQLRDIGGLVVIDFIDMTSEEHRKAIE
KAMEKATSSDRARIQIGTISRFGLLEMSRQRLMSSVAESVERTCPACDGRGTVPTVPNLA
LSILRQLEDGCNTSNQTQKITIQSSVDVITYLLNEKRNNIGQLEVKHEVKITLLPNPYMQ
FPNFSISKQAGSKKSHHKSYQGISKPQYNLAENGLEDNAEIAAINSNHPTTRKPNQKKVK
PSFSFMGMIKSTLGLGDKEKDKKSNKKQPNKNQNRNRNKNQNRNRNRNQNQNKAQSNKPQ
NKQQGKQSNRAQSNKPQNKQQNNKPQQKPKENPKNVVPKDKEIKAQAQPKEQAPKATAEN
KKPQQQQKPKENLQEKPKNVTPKEKEVKPQAQPKEQVPKVTQENKKPQQQQEPKENPQEK
PKSVTPKDKETKPQAQPKEQAPKATAENKKPAKALPKNKKPVEVKSEEKPKVQTGNTAKP
EASPNDGNKSQDGDV
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatatattaattaatgcaacgcactctgaagaggttagagttgcgattgtaaag
aataaaaaactaacctctcttaatatagaaaccagccttaatcaaaaaaataaaggcaat
atttacaagggaagaatctctagggttgagcaatctttagaggctgcttttgttgattat
ggcaaagacaaacaaggttttttgccattcaaagaagtggctgaaaccttaaaagaaaat
gcaaaagcctctggtgacaaactcaccatttccgatgtgctaaaagaaggacaagaaatt
attgtccaagttgaaaaggaagagcggggcaacaaaggggcggcattaagcacctacacc
aacttggctggtgcctatatgattttgacaccaaacaatgcaaaaagtaacggcatttct
agacaaattacctcaacagatagacaatcactcaaagaaattattggcaaaattgttatg
cctgaaaactcaggtttaatcattcgcacagcgggttcggggaaaaatttagaagaatta
caatgggaagttgattacttatcagaattgtggaagtcaattaacgccgctgctgaaaat
cgcaaagcacccttcttaatctatcaagaaagtgatattgtgattcgcacgctgcgtgat
tatctgcgagaagatacagacagcgtcattatcgatgatttagcaactttccaaaatgcc
aaagaatttgttagtttcgtattaccgcactacatagaccgcattaagcactttgattct
tctggacattctttgttcaaccacatggatgttgaatcacaagtaaaaagtgtgtttgag
cgtgaagtttccctgcgtacaggtgcaaccattgtctttgaccctaccgaagcactgact
gccattgacattaactccgcccgtgccaccaaaggtgccgacattgaagaaaccgcttat
aacacgaatttagaggctgccaaagaaattgctgcacagttgcaactgcgtgatattggt
ggcttggtggttattgactttatcgatatgacttccgaagaacatcgaaaagccatcgaa
aaggcaatggaaaaagccaccagttcagaccgtgctcgcatccaaattggcacaatttca
cgctttggcttgctagaaatgtcaaggcaacgcctaatgagttcggtggcagaatcggta
gaaagaacctgccctgcctgcgatggtcgtggcacagtgccaaccgttccaaatctagca
ttaagtatcttaagacaacttgaagacggctgcaatacctccaatcaaacgcagaaaata
accattcaatccagtgttgatgttatcacctatttacttaacgaaaaacgcaataacatt
ggtcaattagaagttaaacatgaggtcaaaatcactttattgcccaacccctacatgcaa
tttccaaatttcagcatcagcaaacaagcagggtctaaaaaatcacaccataaaagttat
caaggtatttctaagccacagtacaatcttgccgaaaatggactggaagataacgcagaa
attgcagccattaacagcaatcacccgaccacacgcaaacccaatcaaaagaaggttaag
ccttcattttctttcatgggtatgattaaatcaacattggggcttggcgacaaggaaaaa
gacaagaagtcaaacaaaaaacaacccaataaaaaccaaaatcgcaataggaataagaac
caaaatcgcaatagaaatcgcaatcagaatcagaataaagcgcaaagcaacaagccacaa
aataaacaacaaggcaagcaaagtaacagagcgcaaagcaacaagccacaaaataaacaa
caaaacaacaagccacagcaaaagccaaaggaaaatcctaagaatgtagtgcctaaagac
aaagagattaaagcacaagcgcaacccaaagagcaggcaccaaaagcaacagcagaaaac
aaaaagccgcaacaacagcaaaagccaaaggaaaatctgcaagaaaagcctaagaatgta
acacctaaagagaaagaggttaagccacaggcgcaacccaaagaacaggtgccaaaagta
acgcaggaaaacaaaaaaccgcaacaacagcaagaaccaaaggaaaatcctcaagagaag
cctaaaagtgtaacgcctaaagataaagagactaagccacaggcacaacctaaagaacag
gcaccaaaagcaacagcagaaaacaaaaagcctgctaaagccttgccaaaaaacaaaaaa
cccgttgaagtaaaaagcgaagaaaagccaaaggtacaaacaggtaatactgccaaacca
gaggccagccctaacgatggcaacaaaagccaagacggcgatgtataa
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