Bathymodiolus thermophilus thioautotrophic gill symbiont: MS2017_1128
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Entry
MS2017_1128 CDS
T07716
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bthg
Bathymodiolus thermophilus thioautotrophic gill symbiont
Pathway
bthg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bthg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MS2017_1128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bthg03019
]
MS2017_1128
03400 DNA repair and recombination proteins [BR:
bthg03400
]
MS2017_1128
Enzymes [BR:
bthg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MS2017_1128
Messenger RNA biogenesis [BR:
bthg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MS2017_1128
DNA repair and recombination proteins [BR:
bthg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MS2017_1128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
HTH_24
DUF2779
Motif
Other DBs
NCBI-ProteinID:
AYQ56830
UniProt:
A0A3G3ILU3
LinkDB
All DBs
Position
complement(1655103..1657229)
Genome browser
AA seq
708 aa
AA seq
DB search
MFKNKYQLLQNTFGFDAFRPLQEAVVDKILNREDVLLILPTGGGKSLCYQLPALLMEGVV
VVVSPLLALMQDQVHGLTAKGIRSVMMSSMQSGEEIWQAQNDLQNGAVKLVFVAPERLQN
EQFLNFLTTLNIAFFAIDEAHCVSEWGHEFRADYRQLGLLKSHFPEVGIAAFTATATTQV
EKDIVNQLQFSRSDNIIRGKIYRDNLFISVQSRQGNGHQQLLDFLKNHTNEQGIIYTLSR
KNTESLSAFLSTQGLKVRAYHAGLPTEERHQAFSDFVNDEIDIMVATIAFGMGIDKSNIR
FVVHMTIPKTMEAYYQEMGRAGRDGMKSEVLLLYSTADLGLLGRFIADIEDEEYRNLAYH
KLNLIKKYAFSESCRHQALSHYFDDEMPKCETQCDNCLNPDVERSDISEQAKMFLSTVYR
TEQNFGQVYIVDVLLGSKNKKVLNNGHQDLSVYGIGNATSKALWKIIGDRLLEIDALTVN
EFKALKLTNFAMKILKSEQAVDIRSRNLQQNTKVVTQIKQQEYAVDEKILEALQALRREI
AREENMPAYIIFDNKALTEMAHFLPDSEEKLLQINGVGKIKLEKYGTRFLDLLATLRTDD
FQAPIAKTKPTTQKLHPTYQATLALIEQEETIEHICQQRDLTLSTVLSHINKLANIGKIE
HTKRQQLFATVPTNETVTHWIMQGLEEVGSIEKIHHHLAIFKQLNQID
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaaaataaataccaactactacaaaacactttcgggtttgatgcattccgtcca
ttgcaagaagcggtggtggataaaattttgaatcgtgaagatgtactactaatcttgcca
acagggggcggaaaatcgttatgttatcaattgccggcgttgttgatggagggggtcgtg
gtagtggtttcccctttgttggcattgatgcaagatcaagttcacggcttgacagcaaag
ggaattcgatcagtaatgatgtcgtctatgcaaagtggggaggaaatttggcaagcacaa
aatgatttgcaaaacggtgcagtaaaactggttttcgttgctcccgagcgcttacaaaat
gagcagtttttgaattttttaaccacactcaatattgccttttttgctattgacgaagcc
cattgcgttagtgaatgggggcatgaattccgtgcagattatcgtcaactgggtttgtta
aagtcccatttccccgaagtcggcattgccgcttttacggcaacagcgaccacgcaagtg
gaaaaagacattgttaatcaattacaatttagccgtagcgacaatattattcgtggcaaa
atttatcgagataatttgtttattagcgttcaatctaggcagggcaatgggcatcaacaa
ttattagattttttgaaaaatcacacgaatgagcagggtattatttatactttgtcacgg
aaaaacaccgaatcattgagtgcatttctaagcacccaaggcttaaaagtgcgcgcttac
cacgctggattgcccaccgaagagcgccaccaagcattcagcgattttgtgaatgatgag
attgacatcatggttgccaccattgcttttggaatgggtattgataagagcaacatccgt
ttcgtagtacacatgactatccctaaaaccatggaagcgtattaccaagaaatgggtagg
gcaggcagagatggtatgaaaagtgaagttttgttgctttattccacagcagatttgggc
ttattagggcgttttattgccgatattgaagacgaagagtaccgaaatttagcctaccac
aaacttaatttaattaaaaaatacgccttttctgaaagttgtcgacatcaggcactcagt
cattattttgatgatgagatgcccaaatgcgaaacccaatgtgacaattgcttaaatccc
gatgttgagcgcagcgacattagcgaacaggcaaagatgtttttatcaaccgtttaccgc
accgagcaaaattttggacaagtgtatattgttgatgtgttattaggctcaaaaaacaaa
aaagtactcaacaatgggcatcaagatttatccgtctatggtattggcaatgcgaccagt
aaggctttgtggaaaattattggcgaccgtttgttggaaatagacgcattaacggtcaat
gaatttaaagctttaaagttaaccaattttgccatgaaaatcttaaaatcggaacaagcc
gtagatattcgcagtcgcaatttacaacaaaacactaaagttgttacgcaaattaaacaa
caagaatacgcagtagatgaaaagattttagaggccttgcaagcccttagacgagaaatt
gccagagaagagaatatgcctgcttatattatttttgacaataaagccttaacagagatg
gcacattttttacccgatagcgaagaaaaactactacaaattaacggtgtgggaaaaatc
aaacttgaaaaatacggcactcgttttttagacctgttagccaccctaagaacagatgat
tttcaagcgcccatcgccaaaaccaagcccaccacccaaaaactacaccccacttaccaa
gccactctagcactcatcgagcaagaggaaaccatagagcacatttgtcaacaacgcgat
ttaaccctctccaccgtactcagccacatcaacaaactggcaaacatcggcaaaattgaa
cacaccaaaagacaacaattattcgccacagttcccaccaacgaaaccgttactcactgg
attatgcaaggtcttgaagaagtgggttcaattgaaaaaatacaccaccatttagcaatt
tttaaacagcttaatcaaatagattaa
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