Bathymodiolus thermophilus thioautotrophic gill symbiont: MS2017_1227
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Entry
MS2017_1227 CDS
T07716
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bthg
Bathymodiolus thermophilus thioautotrophic gill symbiont
Pathway
bthg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bthg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MS2017_1227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bthg03019
]
MS2017_1227
03016 Transfer RNA biogenesis [BR:
bthg03016
]
MS2017_1227
Enzymes [BR:
bthg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MS2017_1227
Messenger RNA biogenesis [BR:
bthg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MS2017_1227
Transfer RNA biogenesis [BR:
bthg03016
]
Prokaryotic type
tRNA degradation factors
MS2017_1227
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
HTH_5
Motif
Other DBs
NCBI-ProteinID:
AYQ56924
UniProt:
A0A293P119
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All DBs
Position
complement(1762372..1764489)
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AA seq
705 aa
AA seq
DB search
MNDPHQKRESDKYDNPIPSREYILEYIAKQPHSFYDLCDALEVTGKQKKPLTHRLKAMVR
DRQLNMNREGMYDIFDTERDIVVGTINANPKGFGFVVLDEGGKDLRLSAYQMKQVFHGDR
VKVRMLDQRGDSEIIEVLKSLKTVVGRLHINSEKSWIVVDDRRICNNIIISEISDDNKNE
QIVIVEIVEAPTLKELAKGKIIQILGDYMDEGVETEAALYRNGIPVDFSEEALAQTEHLP
TEVTAQDKQDRVDITDMKLVTIDGEDSRDFDDAVYAEPTSNGWKLVVAIADVSHYVEEGT
ALDMDAIERGNSVYFPRRVVPMLPEAISNGLCSINPDVERLCMTCEMNIDSEGNLIDYKF
YSAVMFSHARLTYTKVGKILEDHDPALTQEYASVMGNLNALYDLYKALKDARTRRGVMDF
DRIETQILFDDKGKISNIVATSRNDAHKLIEECMLMANQATAKYLAKNDEDFLYRIHPKP
TAEKVEVTRQFLTAVGLTLEGGEQPETKHFAKVLENAKGRDDENIIKTVVLRTMKQAVYT
PANEGHFGLAFEDYTHFTSPIRRYPDLLVHRAIKRVLAKKTRKPSKRMVELGAELSVTER
RADEATRDVEKWLKCEYMRDKVGETFNGIISGVMGFGIFIELTDVYTEGMISIRDMKDDY
YAFDDIHHKLKGERTGKTFQLGDTIKVQVASVNLDDRQMVFIPST
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacccgcaccaaaaaagagaatcagacaagtacgacaacccaattccttcaaga
gaatatattcttgaatatattgccaaacagccccattcattttacgatttgtgcgatgca
cttgaagtaacgggtaagcaaaaaaaacctttaacacatcgccttaaagcaatggttcgt
gatcgacaattaaacatgaaccgtgaaggtatgtatgatatttttgatacggaaagagac
attgttgttggcactattaatgccaaccccaaaggctttggttttgtagtgttggatgaa
ggcgggaaagatttacgcctctctgcctatcaaatgaagcaagttttccatggcgataga
gtgaaggtaagaatgcttgatcagcgtggtgattctgaaattattgaagtgcttaaaagc
cttaaaactgtagtagggcgcttacatattaattctgaaaaatcttggatagtggttgac
gatagacgcatttgcaacaatattattatttctgaaattagtgatgacaataaaaatgaa
caaattgttattgttgaaatcgttgaagcaccaacacttaaagaacttgccaagggcaaa
attattcaaattcttggcgattatatggatgaaggtgttgaaaccgaagctgcgctttat
cgtaatggcattcctgtggatttttcagaagaagccttagcacaaaccgaacacttgcca
accgaagtaaccgcacaagataagcaagaccgtgttgatattactgatatgaaactggtt
accattgatggcgaagattctcgtgattttgatgatgctgtttatgccgaacctacctct
aatggttggaaattagtggttgctattgctgatgtttctcattatgttgaagagggaacg
gcgcttgatatggatgcaattgagcgtggaaattcggtttattttccaagacgcgtagtg
ccgatgcttcctgaagcgatttccaatgggctgtgttcaattaatcctgatgtagagcgc
ttgtgtatgacttgcgaaatgaacattgattcagaaggtaatttgattgattataaattt
tattcagcagtgatgttctcacacgcacgcctaacttacaccaaagtgggtaagatttta
gaagaccacgacccagcattaacacaagagtatgcgagtgttatgggtaatttaaatgcc
ttgtatgatttatataaagccttaaaagatgccagaactcgacgaggcgtcatggatttt
gaccgcattgaaacacaaattctgtttgatgataaaggcaaaattagcaacatcgttgcc
acttctcgtaacgatgcacacaaacttattgaagaatgtatgcttatggcaaaccaagcc
acagcaaagtatttggctaaaaatgatgaagatttcttgtatcgtattcaccctaagcca
accgcagaaaaggtcgaggttactcgtcaatttttgactgctgtcggcttaaccttagaa
ggtggcgaacaaccagaaaccaagcactttgccaaagtattagaaaatgccaaagggcga
gacgatgaaaatatcattaaaactgttgtgttacgcacaatgaagcaagcagtttatacg
cctgctaatgaagggcactttggtttagcctttgaagattacacgcatttcacatcccca
atcagacgctatcccgacttattggtgcatcgtgccattaagcgtgttttggctaaaaaa
accagaaaaccaagcaagagaatggttgagctcggtgccgaattgtccgtaacagagcgc
agagcagacgaagccactcgtgatgtggaaaaatggctgaaatgcgaatatatgcgtgat
aaagttggtgaaactttcaatggcattatttctggtgtaatgggttttggtatctttatt
gaacttaccgatgtttataccgaaggcatgatttctattcgtgatatgaaagatgattac
tatgcttttgatgatattcaccacaaacttaaaggtgagcgcacaggtaaaacttttcaa
cttggcgacactataaaggttcaagtggcttctgttaatttagatgataggcaaatggtg
tttataccttctacctga
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