Burkholderia thailandensis 2002721643: BG87_1605
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Entry
BG87_1605 CDS
T03882
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bthl
Burkholderia thailandensis 2002721643
Pathway
bthl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bthl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG87_1605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bthl03019
]
BG87_1605
03009 Ribosome biogenesis [BR:
bthl03009
]
BG87_1605
Enzymes [BR:
bthl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BG87_1605
Messenger RNA biogenesis [BR:
bthl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BG87_1605
Ribosome biogenesis [BR:
bthl03009
]
Prokaryotic type
rRNA processing factors
BG87_1605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJY00354
LinkDB
All DBs
Position
I:complement(1769779..1772994)
Genome browser
AA seq
1071 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPER
PAPSPAPQRQSAPEAAAPVAAAPASGGFMKWLKGLFGVQPAAAPAPAPAAQEAAARPARE
RGERGEKAERGERGGDRNRNRRGGAAQQAGGRDQAAAGGGRGQAQRAEREGKETREPREG
REARGGRDNREGREAREARETREPREPREQREPREPREPREQREPRERAETADASEAPRG
ERRERGERRKPAQHVATLETVNRGESALAEAAEKPAYAPGAEAGVDADSNARDGEERRRR
RRGRRGGRREREDEGAAHAAEGGEGVTVEAFEHAEQAQQGVAPAAGHEPQHVAQAGAGAA
AVAAAAIAADSAAHVESGAKVEPQPAAGAPVADTQRAEAAPARLVEAPAQAASTAQAEVE
QAAPATAAHVQPAAADVAHEPPAPAATAPAEAAPAEAPAAEASEVAAPAVAPAVVAEPAP
VAETQQPAAVAAAAPLAAPVAHEPAPVAETHVPAAARAEAATPASVSTAGASLDTVLEAA
GLVWVNTDTDKLRAAQAAAAQIVPPARVPRERKPLPPVDAAPMQQVETTHR
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgacatcgacatcgaaaccgccggccgcgaacaacgcaaaggcaac
atctacaagggcgtcgtcacccgcatcgaaccgtcgctcgaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcgttgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaggagcgcggcaacaagggcgcggcgctcaccaccttcatctcg
ctcgccggccgctatctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggaactgcgcgagacgatggcgcaactgcagatcccc
gacggcatgagcatgatcgcccgcacggcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcggcgtcgcaaagcggc
catcccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgacatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtccccctcttctcgcgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggagacggcgacc
cgcacgaacctcgaggcggccgatgaagtggcgcgccagctgcgtctgcgcgacctcggc
ggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctcaagcacgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggccctgtccgaaggcagc
cacgtcacctgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggagaacaccgcggcgatccac
tgccaggtgcccgtcgaggtgacggccttcctgctcaacgaaaagcgccaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcgtcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgca
tcgtggaagatggccgaggaagccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaaacgaagccgcgccaggaagcggccgtcaagggcatcacgcccgagcgt
ccggcgccgagccccgcgccgcagcgccagagcgcgccggaagcggctgcgcccgtggcc
gccgcgcccgcgagcggcggtttcatgaagtggctgaagggcctgttcggcgtgcagccc
gccgcggcgcccgcaccggcgcccgccgcgcaggaagcggccgcgcgtccggcgcgcgag
cgtggcgaacgcggcgagaaggccgagcgcggcgaacgcggcggcgatcgcaaccgcaac
cgtcgcggcggcgccgcgcagcaagccggcggacgcgatcaggcagcggcaggcggcggc
cgcggtcaggcgcagcgcgccgagcgcgaaggcaaggaaacccgcgagccccgcgaaggc
cgcgaagcacgcggcggccgggacaaccgggaaggccgcgaagcacgcgaagcacgcgaa
acccgcgaaccgcgcgaaccgcgcgaacaacgcgagccgcgcgaaccccgtgagccgcgc
gaacagcgcgaaccccgcgaacgcgccgaaacggccgacgcctcggaagcgccgcgcggc
gagcgccgtgagcgcggtgagcgtcgcaagccggcccagcacgtcgcgacgctcgaaacc
gtgaaccgcggcgaaagcgcactcgcggaagccgctgaaaagccggcgtacgcgcctggc
gcggaagccggcgtcgacgcggattcgaacgcgcgtgacggcgaggaacgccgccgccgc
cgccgcggtcgccgtggcggccgccgcgagcgcgaggacgaaggcgcagcgcacgctgcg
gaaggcggcgaaggcgtgacggtcgaagcgttcgagcatgccgagcaagcgcagcaaggc
gtcgcgcctgccgccggccacgagccgcagcatgtcgcgcaagcgggcgcgggtgcggcg
gcagtcgcggctgcggccatcgccgctgattctgccgcgcatgtcgagagcggcgcgaag
gtcgagccgcaaccggcagccggggcgcccgtcgccgacacgcagcgtgccgaggcggcg
cctgcgcgactggtcgaagcgccggcgcaagccgcttcgacggctcaagccgaagtcgag
caagccgctccggcaaccgcggcgcacgtacagccggctgcggccgatgtcgcgcacgag
ccccccgctccggccgcaaccgcccccgccgaagccgccccggccgaagcgcctgccgcg
gaagcgtccgaagtcgccgcacccgcggtcgctccggccgtggtcgcggagcctgcgccg
gtcgccgaaacgcagcagcccgctgctgtcgcggcggccgcaccgctcgcagcgcctgtc
gcgcacgagccggctcccgtcgccgagacgcacgtcccggcggccgctcgagccgaggcg
gccactccggcctccgtctcgaccgcgggcgcgagcctcgacacggtgctcgaagccgcc
ggtctcgtgtgggtcaacaccgacacggacaagctgcgcgccgcgcaggccgccgccgcg
caaatcgtgccgcccgcgcgcgtgccgcgcgaacgcaagccgttgccgcccgtcgacgcg
gcgccgatgcagcaggtcgagacgacgcaccgctga
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