Burkholderia thailandensis USAMRU Malaysia #20: BTRA_1624
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Entry
BTRA_1624 CDS
T03391
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bthm
Burkholderia thailandensis USAMRU Malaysia #20
Pathway
bthm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bthm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTRA_1624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bthm03019
]
BTRA_1624
03009 Ribosome biogenesis [BR:
bthm03009
]
BTRA_1624
Enzymes [BR:
bthm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BTRA_1624
Messenger RNA biogenesis [BR:
bthm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BTRA_1624
Ribosome biogenesis [BR:
bthm03009
]
Prokaryotic type
rRNA processing factors
BTRA_1624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIC86800
LinkDB
All DBs
Position
1:complement(1770615..1773812)
Genome browser
AA seq
1065 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPER
PAPSPAPQRQSAPEAAAPVAAAPASGGFMKWLKGLFGVQPAAAPAPAPAAQEAAARPARE
RGERGEKAERGERGGDRNRNRRGGAAQQAGGRDQAAAGGGRGQAQRAEREGKETREPREG
REARGGRDNREGREARETREPREQREPREPREPREQREPRERAETADASEAPRGERRERG
ERRKPAQHVATLETVNRGESALAEAAEKPAYAPGAEAGVDADSNARDGEERRRRRRGRRG
GRREREDEGAAHAAEGGEGVTVEAFEHAEQAQQGVAPAAGHEPQHVAQAGAGAAAVAAAA
IAADSAAHVESGAKVEPQPAAGAPVADAQRAEAAPARLVEAPAQAASTAQAEVEQAAPAT
AAHVQPAAADVVHEPPAPAATAPAEAAPAEAPAAEASEVAAPAVAPAVVAEPAPVAETQQ
PAAVAAAAPLAAPVAHEPAPVAETHVPAAARAEAATPASVSTAGASLDTVLEAAGLVWVN
TDTDKLRAAQAAAAQIVPPARVPRERKPLPPVDAAPMQQVETTHR
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgacatcgacatcgaaaccgccggccgcgaacaacgcaaaggcaac
atctacaagggcgtcgtcacccgcatcgaaccgtcgctcgaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcgttgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaggagcgcggcaacaagggcgcggcgctcaccaccttcatctcg
ctcgccggccgctatctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggaactgcgcgagacgatggcgcaactgcagatcccc
gacggcatgagcatgatcgcccgcacggcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcggcgtcgcaaagcggc
catcccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgacatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtccccctcttctcgcgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggagacggcgacc
cgcacgaacctcgaggcggccgatgaagtggcgcgccagctgcgtctgcgcgacctcggc
ggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctcaagcacgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggccctgtccgaaggcagc
cacgtcacctgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggagaacaccgcggcgatccac
tgccaggtgcccgtcgaggtgacggccttcctgctcaacgaaaagcgccaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcgtcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgca
tcgtggaagatggccgaggaagccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaaacgaagccgcgccaggaagcggccgtcaagggcatcacgcccgagcgt
ccggcgccgagccccgcgccgcagcgccagagcgcgccggaagcggctgcgcccgtggcc
gccgcgcccgcgagcggcggtttcatgaagtggctgaagggcctgttcggcgtgcagccc
gccgcggcgcccgcaccggcgcccgccgcgcaggaagcggccgcgcgtccggcgcgcgag
cgtggcgaacgcggcgagaaggccgagcgcggcgaacgcggcggcgatcgcaaccgcaac
cgtcgcggcggcgccgcgcagcaagccggcggacgcgatcaggcagcggcaggcggcggc
cgcggtcaggcgcagcgcgccgagcgcgaaggcaaggaaacccgcgagccccgcgaaggc
cgcgaagcacgcggcggccgggacaaccgggaaggccgcgaagcacgcgaaacccgcgaa
ccgcgcgaacaacgcgagccgcgcgaaccccgtgagccgcgcgaacagcgcgaaccccgc
gaacgcgccgaaacggccgacgcctcggaagcgccgcgcggcgagcgccgtgagcgcggt
gagcgtcgcaagccggcccagcacgtcgcgacgctcgaaaccgtgaaccgcggcgaaagc
gcactcgcggaagccgctgaaaagccggcgtacgcgcctggcgcggaagccggcgtcgac
gcggattcgaacgcgcgtgacggcgaggaacgccgccgccgccgccgcggtcgccgtggc
ggccgccgcgagcgcgaggacgaaggcgcagcgcacgctgcggaaggcggcgaaggcgtg
acggtcgaagcgttcgagcatgccgagcaagcgcagcaaggcgtcgcgcctgccgccggc
cacgagccgcagcatgtcgcgcaagcgggcgcgggtgcggcggcagtcgcggctgcggcc
atcgccgctgattctgccgcgcatgtcgagagcggcgcgaaggtcgagccgcaaccggca
gccggggcgcccgtcgccgacgcgcagcgtgccgaggcggcgcctgcgcgactggtcgaa
gcgccggcgcaagccgcttcgacggctcaagccgaagtcgagcaagccgctccggcaacc
gcggcgcacgtacagccggctgcggccgatgtcgtgcacgagccccccgctccggccgca
accgcccccgccgaagccgccccggccgaagcgcctgccgcggaagcgtccgaagtcgcc
gcacccgcggtcgctccggccgtggtcgcggagcctgcgccggtcgccgaaacgcagcag
cccgctgctgtcgcggcggccgcaccgctcgcagcgcctgtcgcgcacgagccggctccc
gtcgccgagacgcacgtcccggcggccgctcgagccgaggcggccactccggcctccgtc
tcgaccgcgggcgcgagcctcgacacggtgctcgaagccgccggtctcgtgtgggtcaac
accgacacggacaagctgcgcgccgcgcaggccgccgccgcgcaaatcgtgccgcccgcg
cgcgtgccgcgcgaacgcaagccgttgccgcccgtcgacgcggcgccgatgcagcaggtc
gagacgacgcaccgctga
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