Burkholderia thailandensis USAMRU Malaysia #20: BTRA_1763
Help
Entry
BTRA_1763 CDS
T03391
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bthm
Burkholderia thailandensis USAMRU Malaysia #20
Brite
KEGG Orthology (KO) [BR:
bthm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bthm03019
]
BTRA_1763 (hrpA)
Enzymes [BR:
bthm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BTRA_1763 (hrpA)
Messenger RNA biogenesis [BR:
bthm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BTRA_1763 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
NACHT
T2SSE
AAA_19
nSTAND3
AAA_23
AAA_25
PhoH
Motif
Other DBs
NCBI-ProteinID:
AIC86873
LinkDB
All DBs
Position
1:1922431..1926573
Genome browser
AA seq
1380 aa
AA seq
DB search
MSNVPKSPAQKHAGTPGEAQPAGAHAPRPPRPPRAPSGPVGAPRAALEDAGSEAARAPHA
PRARTAPNPVPPITFPESLPVSGKRDEIARAIAAHQVVIVCGETGSGKTTQLPKICLALG
RGVGAGGAGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMT
DGILLAESQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKQILPRRPDLKLIVTSATIDA
DRFARHFGSDERPAPVIEVSGRLYPVEVRYRPIADDRPAAVRHAEGAASGRDRAKSAREA
ERDLMDGIVDAVDELCREGPGDVLVFLPGEREIRDAAESLRKHHPPHTEILPLFARLSAA
EQERVFKASNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIESISQ
AAANQRAGRCGRVADGICIRLYEESDFAGRARFTDPEILRSSLASVILRMKSLHLSAIES
FPFIEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQQAL
REVLVIASALSVQDPRDRPIDAQEQADQAHRRFADERSEFLQWLRIWAWFEEAVAHKKSN
RQLVDACRQHFLSHLRLREWRDVHSQLLTVVREHGWRLNEADATFEQIHLSLLTGLLGNI
GFKAEDEPHYLGARGIKFHLWPGSALVKKAGRWVMAAELVETSRLYARCIAKIEPEWIER
IGAHLLKKSLSEPHWEKRPAQVTAFERATLYGLTVYHRRRVAFGRQDPARARELFIRGAL
VDGEFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVDDELIHAFYDQAIPSGIHTGAAFE
RWYRDEVKKSGQPEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRATMAGVEMALTYHFEPG
SPRDGVTLAVPLFALNQVDARRAEWLVPGMLKEKAHLLLKSLPQKLRRHCVPLPEYAAGF
VERAGRERFGAGGLVDALIADVRERTQVATKTSDFKLETLPAHLFMNFKVIDEHGRQLAM
GRNLAQLRAELGAQAQQHFQKIAAAATLAPAGAPSGAAAAEAPAGGARPRGAQGGGATPA
VAPSAAQAGAAAAGATALYENLTTWNFGKLPELLEIRRRGETLFGYPALVDRGTHCDVEV
FDSPDEAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAMQYMSLGTQDELRDQLIAT
ALDRACLQDPLPADDASFHARRDEGRSRLNLLAQEIARLVGQILAEYAGLAKKLAQAKPF
PAAHADLQGQLAALVGKRFVIDTPYAQLAHFPRYLKGIALRIDKLKADPARDARQAAELQ
PLAQHYQRSIVQRGGVADARLAEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcgcaaaaacatgcgggcacgccgggcgaggcgcag
cccgccggcgcgcacgcgccgcggccgccgcgcccgccgcgggcgccgtccgggccggtg
ggcgcgccgcgcgccgccctcgaagacgccggctccgaggccgcgcgcgcgccgcatgcg
ccgcgcgcgcggacagcgccgaatcccgttccgccgatcacgtttcccgaaagcctgccc
gtgtcgggcaagcgcgacgagatcgcgcgcgcgatcgccgctcaccaggtcgtgatcgtc
tgcggcgagacgggctcgggcaagaccacccagttgccgaagatctgcctcgcgctcggc
cgcggcgtcggcgcgggcggcgcggggctgatcggccacacgcagccgaggcggctcgcg
gcgtcgtcgacgggccgccggatcgccgaggagctcggcacgccgttcggcgaagtggtg
ggctacaaggtgcgcttcaccgacaacctcgcgccgggcgcgtcggtcaagctgatgacg
gacggcatcctgctcgccgagtcgcagaccgatccgctgctcaaggcgtacgacaccctc
atcatcgacgaggcgcacgagcgcagcctgaacatcgattttctgctcggctacctgaag
cagatcctgccgaggcggccggacctgaagctgatcgtcacgtcggcgacgatcgacgcg
gaccgtttcgcgcgccatttcggcagcgacgagcggcccgcgccggtgatcgaggtgagc
gggcggctctatccggtggaagtccgctaccggccgatcgccgacgaccggccggccgcc
gtccggcacgcggaaggcgcggcgtccgggcgcgaccgcgcgaagagcgcgcgcgaggcc
gagcgcgacctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgagggcccg
ggcgacgtgctcgtgttcctgcccggcgagcgcgagatccgcgacgccgccgagtcgctg
cgcaagcaccatccgccgcacaccgagatcctgccgctgttcgcgcggctgtcggcggcc
gagcaggagcgcgtgttcaaggcgtcgaacgcgcggcggatcgtgctcgcgacgaacgtc
gccgagacgtcgctcacggtgccgggcatccgctacgtcgtcgataccgggcttgcgcgc
gtgaagcgctattcgtaccggaacaaggtcgagcagttgcagatcgagtcgatctcgcag
gcggccgcgaaccagcgcgcgggccgctgcggccgcgtcgccgacggcatctgcatccgt
ctctacgaggaaagcgatttcgccggccgcgcgcgcttcaccgatccggaaatcctgcgc
tcgtcgctcgcatcggtgatcctgcggatgaagtcgctgcatctgtcggcgatcgaatcg
tttccgttcatcgagccgccgcccggccgcgcgatcgcggacggctatcaactgctcaac
gagctcggcgcggtcgacgacgacaacgcgctcacgccgctcggccgcgagctcgcgcgg
ttgccgctcgatccgcgcgtcggccggatgatcctcgccgcgcgcgaccagcaggcgttg
cgcgaagtgctcgtgatcgcgagcgcgctgtccgtgcaggacccgcgcgatcgcccgatc
gacgcgcaggagcaggccgaccaggcgcaccggcgcttcgccgacgagcgctccgagttc
ctccagtggctgaggatctgggcgtggttcgaggaggcggtcgcgcacaagaagtcgaac
cggcaactcgtcgacgcgtgccggcagcatttcctgtcgcacctgcggctgcgcgaatgg
cgcgacgtccactcgcagctcctgaccgtcgtgcgcgagcacggctggcgcctgaacgag
gccgacgcgacgttcgagcagatccatctgtcgctgttgacggggctgctcggcaacatc
ggcttcaaggccgaggacgagccgcactatctcggcgcgcgcgggatcaagttccatctg
tggccgggctccgcgctcgtgaagaaggcggggcgctgggtgatggcggccgagctcgtc
gagacgagccgcctctatgcgcgctgcatcgcgaagatcgagccggaatggatcgagcgc
atcggcgcgcacctgttgaagaaatcgctgtccgagccgcactgggagaagcgtcccgcg
caggtcaccgcgttcgagcgcgcgacgctgtacgggctcaccgtctatcaccggcggcgc
gtcgcgttcggccggcaggacccggcgcgcgcgcgggagctgttcatccgcggcgcgctc
gtcgacggcgaattcgacacgaagctcgcgttcttcgcgcacaaccgcaagctgctcgcc
gacatcgagcagctcgagcacaagtcgcgccggcaggacgtgctcgtcgacgacgagctg
attcacgcgttctacgatcaggcgattccgtccggcatccacacgggcgccgcgttcgag
cgctggtaccgcgacgaggtgaaaaagagcgggcagccggaagacaagctgcgcctgctg
tatctgtcgcgcgacgatctgatgcgccacgaggcggcgggcgtgacgaccgatctgttt
ccgaagcgcgcgacgatggcgggcgtcgagatggcgctcacgtaccacttcgagcccggc
tcgccgcgcgacggcgtgacgctcgcggtgccgctcttcgcgctgaaccaggtcgacgcg
cgccgcgccgagtggctcgtgcccgggatgctgaaggagaaggcgcacctgctgctgaag
tcgctgccgcagaagctgcgccgccattgcgtgccgctgccagagtacgcggcgggcttc
gtcgagcgcgccgggcgcgagcgcttcggcgcgggcggcctcgtcgacgcgctgatcgcc
gacgtccgcgagcggacgcaggtcgcgacgaagacgtccgacttcaagctcgagacgctg
cccgcgcacctgttcatgaacttcaaggtgatcgacgagcacggccggcagctcgcgatg
gggcgcaatctcgcgcagttgcgcgcggagttgggcgcgcaggcgcagcagcactttcag
aagatcgccgccgcggcaacgctcgcgccggcgggcgcgccttccggcgcggccgccgcc
gaggcgcccgcgggtggcgcgcggccgcgaggcgcgcaaggcggcggggcgacgcccgcc
gtcgcgccgtcggcggcgcaagcgggcgcggccgccgccggcgcgaccgcgctttatgag
aacctgacgacgtggaacttcggcaagctgccggaactcctcgagatccgccggcgcggc
gagacgctgttcggctacccggcgctcgtcgaccgcggcacgcactgcgacgtcgaggtg
ttcgactcgcccgacgaggcggcgcgaatccaccgcgcgggcctgcggcgcctgttcgcg
ttgcagctgaaggagccgatcaagtacctggagaagaacctgccggggctgcgcgagatg
gcgatgcagtacatgtcgctcggcacgcaggacgaactgcgcgaccagttgatcgcgacc
gcgctcgaccgcgcgtgcctgcaggacccgctgcccgccgacgacgcgagttttcacgcg
cgccgcgacgagggcaggagccggctgaacctgctcgcgcaggagatcgcgcggctcgtc
gggcagatcctcgccgagtacgcggggctcgcgaagaagctcgcgcaggcgaagccgttc
ccggccgcgcacgcggacctgcagggccagctcgccgcgctcgtcggcaagcgcttcgtc
atcgacacgccttacgcgcagcttgcgcatttcccgcgctacctgaagggcatcgcgctg
cgaatcgacaagctgaaggccgatcccgcccgcgacgcgcggcaggcggccgagctgcag
ccgctcgcgcagcattatcagcgctcgattgtgcagcgcggcggcgtcgcggatgcgcgg
ctcgccgagttccggtggctgctcgaggaactgcggatctcgcttttcgcgcaggaactg
cgcacgccgatgccggtgtcggtcaagcggctctacaaagtgtgggagtcgatgcagcgc
tga
DBGET
integrated database retrieval system
