Burkholderia thailandensis USAMRU Malaysia #20: BTRA_4318
Help
Entry
BTRA_4318 CDS
T03391
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bthm
Burkholderia thailandensis USAMRU Malaysia #20
Brite
KEGG Orthology (KO) [BR:
bthm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bthm03016
]
BTRA_4318
Enzymes [BR:
bthm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BTRA_4318
Transfer RNA biogenesis [BR:
bthm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BTRA_4318
Prokaryotic type
tRNA splicing ligases
BTRA_4318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AIC89444
LinkDB
All DBs
Position
2:complement(1080009..1081442)
Genome browser
AA seq
477 aa
AA seq
DB search
MDLTRLTRHGEFEWHIPATGAMRVPGVIYADRKLIADMDDKVYEQVCNVAMLPGIVGASY
AMPDAHWGYGFPIGGVAAFDAHAGGVISAGGVGFDISCGVRTLHTGLVRDDIDAVKKTLA
DALFAHIPAGIGSTGRLRLSAAKTDDMLTGGAVWAVEQGYGTPSDLERIEEGGMVRHAKP
SMVSALAKRRQRDELGTLGSGNHYLEVQEIEDIYDPACAQRYGLQRGQVVVTIHCGSRGL
GHQIGTEFLKDMVIAAKSYGIALPDRELACAPILSDLGERYLGAMRAAINCALANRQVLT
HLTREVFAKVLPAAQLTLFYDVSHNTCKVEDHVIDGRRRQLYVHRKGATRAFGPGHPALP
DALLDAGQPVLVGGSMGTASYVLAGANAPGGERAFGSACHGAGRAMSRFAASRRWRGRAL
VDELAARGILIRSLSDRGIAEEAPGAYKDVGAVVDAAAEAGLARKVARLAPLVCIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggatttgacccgactgacgcggcacggcgaattcgagtggcacatccccgcgacgggc
gcgatgcgcgtgccgggcgtcatttatgcggatcgcaagctgatcgccgacatggacgac
aaggtctacgagcaggtttgcaacgtcgcaatgctgccgggcatcgtcggcgcgtcgtac
gcgatgccggacgcgcactggggatacggttttccgatcggcggcgtcgcggcgttcgac
gcgcacgcgggcggcgtgatctcggcgggcggcgtcggcttcgacatctcgtgcggcgtg
cgcacgctgcacacgggactcgtgcgggacgacatcgacgcggtgaagaaaacgctcgcc
gacgcgctgttcgcgcacattccggccggcatcggcagcaccgggcggcttcggctgtcg
gccgcgaaaacggacgacatgctcacgggcggcgccgtgtgggccgtcgagcagggttac
ggaacgccgagcgatctcgagcgcatcgaagagggcgggatggtgcggcatgcgaagccg
tcgatggtgtcggcgctcgcgaaacggcgccagcgcgacgagctgggcacgctcggctcc
ggcaatcactatctcgaagtgcaggagatcgaggacatctacgatcccgcatgcgcgcaa
cgctacgggctgcagcgcgggcaggtcgtcgtgacgatccactgcggctcgcgcgggctg
ggccatcagatcggcaccgagtttctgaaggacatggtgatcgccgcaaaaagctacggg
atcgcgctgcccgatcgcgagctcgcgtgcgcgcccattctgtcggacctcggcgagcgc
tacctgggcgcgatgcgcgcggcgatcaactgcgcgctcgcgaaccggcaggtcctcacg
catctgacccgcgaagtcttcgcgaaggtattgccggccgcgcagctgaccctgttttac
gacgtgtcgcacaacacgtgcaaggtcgaggatcacgtgatcgacggccgccgcaggcag
ctctacgtgcaccgcaagggcgccacgcgcgcgttcgggcctggacatccggcgctgccc
gatgcgctgctcgacgcgggccagccggtgctggtcggcggtagcatgggaacggcgtcg
tacgtcctggcgggggcgaacgccccgggcggcgagcgcgccttcggctcggcgtgccac
ggcgcgggccgcgcgatgagccgcttcgcggcctcccggcgctggcgcggccgggcgctc
gtcgacgagctcgcggcccgcggcatcttgatccgcagcctgtcggaccgcggcatcgcc
gaagaggcgccgggcgcttacaaggacgtcggcgcggtcgtcgacgccgcggccgaggcc
gggctcgcgcgcaaggtcgcgcggctcgcgccgcttgtctgcatcaagggttga
DBGET
integrated database retrieval system
