Bacteroides thetaiotaomicron 7330: Btheta7330_02456
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Entry
Btheta7330_02456 CDS
T04540
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
btho
Bacteroides thetaiotaomicron 7330
Pathway
btho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Btheta7330_02456 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btho03019
]
Btheta7330_02456 (cshA_1)
Enzymes [BR:
btho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Btheta7330_02456 (cshA_1)
Messenger RNA biogenesis [BR:
btho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Btheta7330_02456 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Utp25_C
AAA_19
AAA_30
AAA_7
AXIN1_TNKS_BD
Motif
Other DBs
NCBI-ProteinID:
ALJ42004
UniProt:
A0A0P0FLP5
LinkDB
All DBs
Position
complement(3001920..3003188)
Genome browser
AA seq
422 aa
AA seq
DB search
MKFSELKLNANVLDALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPIL
NKLSEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKK
GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYLPKE
RQTIMFSATMPAKIQQLAKTILNNPAEIKLAVSRPADKIIQAAYVCYENQKLGIIRSLFT
DEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRINILVA
TDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNFKSIE
NFLEKEIYKIPVPAELGEAPEYKPRSYNNKRGDSSKRRSFGGKRNNNNGKKGNNRPSSPA
RN
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaagttttccgaactaaaactaaatgcaaatgtgcttgatgcgcttgacgccatgcga
tttgacgagtgcacgcctatacaggaacaagcaattccaatcatactagaaggtaaagat
ttgatagcagttgcacaaacgggcactggtaaaacagcagcattcctgctgcctatcctg
aataagttatccgaaggaggacatcccgaagatgccattaactgtgtcattatgtcccct
acccgggaattggcgcagcaaatcgaccagcaaatggaaggcttctcctattttatgccc
gcatcgagtgttgccgtatacggtggaaatgacggaatccttttcgaacaacagaagaag
ggacttacgttaggtgcagatgtagtaatagctactcccggacggctgatagcccattta
agccttggatacgtagatctttccaaggtttcttattttatactggacgaagcagaccgt
atgcttgatatgggattctacgaagatatcatgcaaatcgtgaaatatttgccgaaagaa
cgacagacaatcatgttctcggcaactatgcctgccaaaatacagcaactggcaaaaaca
attctgaataatccggcggaaatcaaacttgccgtttcaagaccggcagataaaatcatt
caggcagcttatgtatgttacgagaatcagaagctaggtatcatacgcagcctttttact
gacgaagtacccgaacgtgtgattattttcgcttcctccaaaatcaaggttaaagaagta
acaaaggctctgaaaatgatgaaactgaatgtaggagaaatgcattcggatcttgaacag
gcacaacgtgaagtggtcatgcacgaatttaaagccggaagaatcaatattctggttgct
acggatatcgttgctcgtggtatcgatattgacgacatccgattggttatcaactttgat
gtcccccatgacagcgaggattatgtgcaccgtatcggacgtacagcacgtgccaacaat
gacggagtagcactcacctttatcagcgagaaagaacagagcaacttcaaatccatcgag
aactttcttgaaaaagaaatatataaaattcccgttcccgccgaattaggagaagcaccg
gaatacaagccccgctcttacaacaataagagaggtgacagttctaaaagaagaagcttc
ggaggaaaaaggaataacaacaatggaaaaaaaggcaataaccgcccctcttctcctgca
agaaactaa
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