Bacteroides thetaiotaomicron 7330: Btheta7330_03123
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Entry
Btheta7330_03123 CDS
T04540
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btho
Bacteroides thetaiotaomicron 7330
Pathway
btho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Btheta7330_03123 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btho03400
]
Btheta7330_03123 (mfd)
Enzymes [BR:
btho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Btheta7330_03123 (mfd)
DNA repair and recombination proteins [BR:
btho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Btheta7330_03123 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ALJ42659
UniProt:
A0AAP3WEY1
LinkDB
All DBs
Position
complement(3872521..3875904)
Genome browser
AA seq
1127 aa
AA seq
DB search
MTITELQQQYAAHPNTAVMERLLKDASVQTIFCGGLCASSASLFSSVLVKQDVCPFVFVL
GDLEEAGYFYHDLTQVLGTEKVFFFPSSFRRSIKYGQKDAANEILRTEVLSRLQKGEEGL
CIVTYPDALAEKVVSRKELSDKTLKLNVGEKLDTTFITDVLHSYGFEYVDYVYEPGQYAV
RGSIIDVFSFASEYPYRIDFFGDEVESIRTFEVESQLSRERKEGVAIVPDLAVTGDVTTS
FLDFIPKETVLAMRDFLWLRERIQVVHDEALTPQAIAVQEAEENGGITLEGKLIDGSEFT
VRALDFRRMEFGNKPTGTPDAKISFHTSVQPIFHKNFDLVAGSFKDYLEQGYSLYICSDS
TKQTDRIRAIFEDRGDKIQFTPVVRTIHEGFVDHTLHLCIFTDHQLFDRFHKYNLKSDKA
RSGKVALSLKELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVFVS
IHSLHKVSKYKGKDGEAPRLNKLGTGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEKGFS
YSPDSFLQRELEASFIYEDTPDQSKATMEVKADMESDRPMDRLVCGDVGFGKTEVAIRAA
FKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRARTAAQSKAVLKGLKEG
EVSILIGTHRILGKDVQFKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRT
LQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANL
PELKVMIERHIPDCRVAIGHGQMEPTQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANT
IIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSG
IHIAMQDLDIRGAGNLLGAEQSGFIADLGYETYQKILAEAVHELRNDEFAELYADEIKGE
GQISGEEFVDECQIESDLELLLPATYVTGSSERMLLYRELDGLTLDKDVDAFRFRLEDRF
GPVPPETQELLRIVPLRRLAARLGVEKVFLKGGRMTLFFVSNADSPFYQSQAFGKMIDYM
MKYTRRCDLREQNGRRSMLIKDVTNVETAVSVLQEIVALPVKELDDH
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgacaataactgagttgcaacaacaatatgccgctcatcctaatacggcagtcatggaa
cgactgctgaaggatgcgtccgttcaaactattttttgcgggggcttatgtgcttcttcc
gcttctcttttctcttctgtattggtgaaacaagatgtgtgtccgtttgtctttgtactg
ggagacctggaagaggcgggctatttttatcatgacctgacacaagtgctgggaacagag
aaagtgtttttcttcccgtcttcattccgccgttccatcaagtacggacaaaaggatgcg
gccaacgagattctgcgtacagaagtactgagccggttgcagaaaggagaagaaggcttg
tgcatcgttacttatccggatgcgctggcagagaaagtggtatcccgcaaggagttgagc
gataagaccttgaaactgaatgtgggagagaagctggacacgacctttatcacagacgtg
ctgcatagctacggtttcgaatatgtggattatgtgtacgagccgggacaatatgccgtt
cggggtagtatcattgacgtcttttcgtttgcttcggaatatccttatcgtattgacttt
ttcggagacgaagtagagagtatccgtacatttgaagtagagtcgcagttgtcccgtgag
aggaaagagggagtggctatagtccctgacctggcagtgacgggagatgtgacaacttct
tttcttgatttcattcctaaagaaaccgttttggcgatgcgtgactttctttggttgcgc
gagcgtatccaggtagtgcacgatgaggctttgacgccacaggctattgccgtgcaggaa
gccgaagaaaatggaggtattacgctggaaggcaagctgattgacggtagtgaatttacg
gtacgtgctcttgatttccgccggatggaatttgggaataagccgaccggtacgccggat
gcaaagatctctttccatacttccgtacaacctatttttcataagaactttgatctggtg
gccggttctttcaaggactaccttgaacagggatattcactttatatctgtagcgacagt
accaagcagaccgaccgtatcagagccatttttgaagaccggggagataagattcagttt
actcctgtagtacgtacgatacatgaaggctttgtggatcatacgctgcatctgtgtatt
tttacggatcatcagctgttcgaccgtttccataagtacaacttgaaaagtgacaaggcc
cgttcgggtaaggtcgctctgtccctcaaagaattgaatcagtttactccgggtgattat
gtggttcacacggatcatggtatcggtcgtttctccggtttggtacgcattccgaatgga
gatactacgcaggaagtgctgaaacttgtctttcagaatgaggatgtcgtgttcgtttcc
attcattcccttcataaagtttccaaatataaaggtaaggacggagaagctccgcgactg
aacaaactgggtaccggtgcctgggagaaactgaaagaccgtacgaaggcgaaaattaaa
gatattgcccgcgacctcattaaactatattcgcagcgccgtcaggaaaagggtttctct
tacagccccgacagcttcttgcagcgtgaactggaagcctcctttatctatgaagatacg
cccgaccaaagtaaggcaacgatggaggtgaaggccgatatggaaagcgaccgtccgatg
gatcgcttggtgtgcggagatgtgggttttggaaagacagaagtagcaatccgtgcagcg
ttcaaagccgtagccgataataaacaggtggcggtccttgtgccgacgaccgtccttgcc
tatcagcatttccagacattccgcgaacgtttgaagggtctgccctgccgggtagaatat
ttgagccgtgcccgtacggcagctcagtccaaagccgtattgaaaggactgaaggaagga
gaagtcagtattcttatcggcacccaccgtattttaggaaaagatgttcagtttaaagat
ttaggcttgctgatcattgatgaagagcagaaattcggagtctctgtgaaggagaagctg
cgacagctaaaggtgaatgtggatacattgaccatgactgccacaccgattccacgtacg
cttcagttctcgctgatgggagcccgcgacttgagtgtaatctctacgcctccgcctaac
cgctatccgattcagacagaagtacataccttcaatgaggaagtgattacggacgcgatt
aattttgagatgagccgcaacggtcaggttttctttgtcaacaaccggattgcgaacctt
ccggaactgaaagtgatgatcgaacgtcatattcccgattgccgtgttgccatcgggcat
ggacagatggaacccacacaactggaacagatcatttttgactttgtcaattatgactat
gatgtgcttttggcgactactatcatagagagcggtatcgatattccgaatgccaatacg
atcattatcaaccaagcgcagaactttggtctgagtgacctccatcagatgcgtggacgg
gtaggacgcagtaacaaaaaggctttctgctatctgctggcgcctccgttgagcagtctg
acggcagaaggaaaacgacgcttgcaggcgattgagaacttcagtgatttggggagtggc
atccatatcgctatgcaggatttggatatacgtggagccggaaacctgcttggagcagaa
cagagtggcttcattgccgatctggggtacgaaacgtatcagaagatacttgccgaagca
gttcatgaactgaggaatgatgagtttgcagaattgtatgcagatgaaataaagggagaa
ggtcagatcagtggagaagaatttgtagacgaatgtcagatagaaagcgatcttgaactt
ctgttgccggccacctatgtgacgggcagcagcgagcgtatgttgctttaccgcgaactg
gacggactgacgctggataaagacgtggatgccttccgtttccgcctggaagaccgcttc
ggacctgttccgccggaaacgcaggaattgcttcgcatcgttcccctccgtcgcttggcg
gcgcgactgggagtggagaaggttttcttgaagggcggacgtatgacgctattctttgtt
tccaatgcggatagtccgttctatcagagtcaggcgtttggcaaaatgatagattacatg
atgaaatatacccgtcgctgtgacctgcgtgagcagaacggccgacggagtatgctgata
aaggatgtgactaatgtggaaactgccgttagtgtgttgcaggagattgtagcgttgccg
gtgaaagaactggatgatcattaa
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integrated database retrieval system
