Bacillus thuringiensis serovar kurstaki YBT-1520: YBT1520_27085
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Entry
YBT1520_27085 CDS
T03435
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bthr
Bacillus thuringiensis serovar kurstaki YBT-1520
Pathway
bthr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bthr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YBT1520_27085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bthr03019
]
YBT1520_27085
03016 Transfer RNA biogenesis [BR:
bthr03016
]
YBT1520_27085
Enzymes [BR:
bthr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
YBT1520_27085
Messenger RNA biogenesis [BR:
bthr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YBT1520_27085
Transfer RNA biogenesis [BR:
bthr03016
]
Prokaryotic type
tRNA degradation factors
YBT1520_27085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
S1CSD-TOTE-2
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AHZ53989
LinkDB
All DBs
Position
complement(5181077..5183515)
Genome browser
AA seq
812 aa
AA seq
DB search
MEEIIQEHIDKLLLFMREEAYKPLTIQELEEAFGIEGSEGFKDFVKALVTMEEKGLVIRT
RSNRYGLPEKMNLVRGKLIGHARGFAFVVPDEKKTGDDDLFIPPTELNGALHGDTVLARL
SSQSSGSRQEGSIVRILERGTKELVGTYTESKNFGFVIPDNKRWTSDIFILKSASMGAVE
GHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLAFPEEVMEHANSV
PETISEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQE
GSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKH
EIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAI
DFDFKEAKVLVDEEGKPTDVVMRDRSVSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE
DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA
RYDADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYIINGKVDNETQAKWREKLPEI
AEHSSNMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVH
VSYLTDDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDERAIDFEIVGMKGTPRR
KFKDRPVVIEQPRTGRKKRGGRSERSSERSNERGGERGTGRKFDRGGKGKGRGSASASAS
ASQPGKKDGNGKKKKAFFENVPGFKKKKKKRK
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
ttggaagaaatcatacaagaacatattgataagttgttattatttatgagagaagaagcg
tataaaccgctaacgatacaagagttagaagaggcatttgggattgaaggttctgagggc
tttaaagatttcgtaaaggcacttgtaacgatggaagaaaagggacttgttattcgtact
cgtagcaaccgttacggtcttcctgaaaagatgaatttagtaagaggtaagttaattgga
catgcacgtggttttgcattcgttgtaccagacgagaagaaaacgggagacgatgatctt
ttcatcccgcctacagaattaaacggtgcacttcatggcgatacagtattagcacgcctt
agttctcaatcgagcggttcgcgtcaagaaggttcaattgtacgcattttagagcgtgga
acgaaagaactagttggtacatatacagaatcgaaaaactttggattcgttatacctgac
aataagcgctggacgagtgatatctttatcttgaaaagcgcatcgatgggtgctgtagaa
ggtcataaagtagttgtgaaaattacgagctatccagagaatcgtttaagtgcagaaggt
gaagttattcaaattctaggtcataaaaatgatccaggagtagatattttatctgtcatt
cataaacatcatttacctttagcattccctgaggaagtgatggagcatgcaaacagtgta
ccagaaacgatttcagaagaagatttaaaagatcgccgcgacctgcgcgatcaaatgatc
gtaacgattgatggtgcagatgcgaaagacttagatgatgctgttacagtaacgaagctt
gagaacggtaactacaagctaggcgttcacattgcggatgtaagtcattacgttcaagaa
ggctctccaattgatgttgaagcagcggaaagagcgacgagtgtatatcttgttgaccgt
gtaatcccgatgattccgcatcgtctatctaacggtatttgttcattaaatccgaaagta
gaccgtctgacgttatcttgtgaaatggaaatcaacaacttaggtgatgttgttaaacac
gagattttccaaagtgtgattaaaacgacagagcgtatgacgtatgctgacgtaagaagc
attttagaagatgaggacgaagagttaattaagcgttatgagccgctcgtaccgatgttt
aaagagatgggtcaattggcacaaattttacgtgaaaaacgtatgcgccgtggtgcaatt
gactttgactttaaagaagcgaaagtattagtggatgaagaaggaaaaccgactgatgtt
gttatgcgtgatcgttctgtttcagagaagttaattgaagaatttatgcttgttgcgaat
gaaacagtagcagagcacttccactggatgaacgtaccgtttatgtaccgtgtccatgaa
gatccgaaagaagataagcttgagcgtttcttcgagtttgtaacgaacttcggatatgcg
gtaaaaggacgtgcgaatgaagtgcaccctcgtgcgctgcaacaaattcttgaaatggtt
caaggacagccagaagaagtagttatttcaacagttatgcttcgttctatgaagcaagct
cgttacgatgcggatagtttaggacatttcggtttatcaactgagttctacacacacttc
acatcaccaattcgtcgttacccagatacaatcgttcatagattaattcgtgaatacatt
attaatggtaaagtcgacaatgaaacgcaagcaaaatggcgtgaaaaattacctgagatt
gcagagcactcttctaatatggaacgccgtgctgttgaagcagagcgtgaaacagatgag
atgaaaaaagcagagtatatggttgataagatcggtgaagagtatgacggtatgattagt
tctgtaacaaacttcggtttattcgtagagcttccaaatacaattgaaggtcttgtacac
gttagctacttaacggatgattactaccgttatgacgagcaacatttcgctatgatcgga
gaacgtacaggaaacgtattccgcatcggtgatgaaattacaattcgcgttattaacgta
aacaaagacgagcgtgcaatcgactttgaaatcgttggcatgaaaggcacacctcgccgt
aagttcaaagatcgtccagtcgttatcgaacagccaagaacaggcagaaagaaacgcggt
ggacgtagcgagcgcagtagcgagcgcagtaatgagcgcggcggtgaacgtggcacaggt
agaaaatttgaccgtggtggcaaaggaaaaggaagaggatctgcatctgcatccgcttct
gctagccagccaggaaaaaaagatggtaacggtaagaagaaaaaagcattcttcgaaaac
gtaccaggattcaagaagaaaaagaaaaagcgtaagtaa
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