Brochothrix thermosphacta: CNY62_06190
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Entry
CNY62_06190 CDS
T05089
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bths
Brochothrix thermosphacta
Pathway
bths03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bths00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CNY62_06190 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bths03400
]
CNY62_06190 (mfd)
Enzymes [BR:
bths01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CNY62_06190 (mfd)
DNA repair and recombination proteins [BR:
bths03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CNY62_06190 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
APP1_cat
Csm2_III-A
Motif
Other DBs
NCBI-ProteinID:
ATF27238
UniProt:
A0A291C1A7
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All DBs
Position
1299965..1303498
Genome browser
AA seq
1177 aa
AA seq
DB search
MSQIKQQFMKQPEMKQVTQMISEDGRPQLVTGLTGSARSLFTALIAESLNRQVIYVAHNL
YQAQQVHESLRSFLSEQQVKLYPADDFVATDMSISSPELRAQRLETLEFMQSNTTGVVII
PISALRKRMTPVSQWTEAKQVFTIGDEIDLTSFRKQMAESGYVYVEKVSLQGEYSIRGGI
IDIFPMTETNPLRVELFDTEVDSIRAFDVDSQRSLDTREKIVLLPAKEWLLNESDRSYLT
KELAKELKKALKKVKEEADQLHLIETIEHDIANITEVMLPTDILKYNAYFYKKPANLLDY
TADNAVLIIDELSRLQEADEQLHQEEINWLMDGIERAEILPQTSLHQLFADTLKHAVQSR
VYLSLFQKTMGSHRLYLSTNFVHKQMQQFHGQMPAVQTEMASWQNNEMATIVVVPTEERL
GKISQTFSDYDISTQLLNETDELVFGQVQLVVGQLNEGFELPLGRLVVVTDAELFGHKTK
PTMKRQKMSNAERIKDYNELKVGDYVVHVSHGVGRYVGMETLDIKGVHKDYLLIIYRGED
KLYIPVEQLELVQKYVGSEGKTPKLNKLGGAEWKRVTARVQKSVIDIADDLIKLYAKREA
EKGFAYSPDDTLMHEFEEAFPYEATEDQGRSVKEIKRDMESIRPMDRLLVGDVGYGKTEV
ALRAAFKAMMDGKQVAFLVPTTILAQQHYETMISRFANFPINIGILSRFRTKKQQEETLA
GLGSGKIDIVVGTHRLLSKDVAYRDLGLLVVDEEQRFGVTHKEKIKQLRANVDVLTLTAT
PIPRTLHMSMVGVRDLSVIETPPANRYPIQTYVVEQNDILIKEAIERELSRSGQVFYLHN
RVDSIVQKADRIQALVPNARVGYAHGQMTENELESTILRFLENEFDVLVTTTIIETGVDI
PNVNTLLVENADRMGLSQLYQLRGRVGRSNRIAYAYFMHEKNKVLREEAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLSDAINERMPQVGEKQGES
STVEIDLPLDAYIPDYYIEDSRQKIEMYKRFRQITTTENIMQLQDDMIDRFGEYPQQVAD
LFIISEIKLNAEKVGIQTIKLKKNSIELLLSEEATQLIDGAKVFKALDMLGRQSGVGMTE
QQLAVTYRLPGTDPAQWLPTLSKFIEQLTYATKDEIK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcaaataaaacagcaattcatgaaacaacctgaaatgaaacaagtcacacaaatg
atttctgaagatggacgaccacaattagtgactggcctgacgggttcagcgcgctcactt
ttcacagcgcttatcgcagaatcgcttaatcgccaagtcatttatgttgctcataattta
taccaagcacaacaagttcatgaatcgttgcgttcatttttatcggaacaacaagtgaag
ctttaccctgcggatgattttgttgcaacagatatgagtatttctagtcctgaacttcga
gcacaacgattggaaacgcttgaatttatgcaaagtaatacgacgggtgttgtcattata
ccgatatcagccttgagaaaaagaatgactcccgtgtcacaatggacagaagcaaaacaa
gtctttactattggtgatgaaatcgatctgacgtcattccgtaaacaaatggctgagagc
ggttatgtatatgtagaaaaagtgagtttacaaggcgagtatagcatccgtggtggaatt
attgatattttcccgatgacagaaacaaatccgttgcgtgtagaactctttgatacagaa
gtagattctattcgtgcgtttgatgtcgatagccaacgctcattagatacgcgtgaaaaa
attgttttgttaccagccaaagaatggttgcttaacgagtctgatcgctcatatcttaca
aaagaattagccaaagaactaaaaaaagcattaaaaaaggtcaaagaggaagcagatcag
ttgcacctcattgagacgattgaacatgatatcgcaaatataacagaggttatgttaccg
acagatatcttaaagtataatgcatacttctataagaaacccgcaaatttattagattac
acagctgataatgccgtgcttattattgatgaattatcacgtttacaagaggctgatgaa
cagctgcatcaagaagaaatcaactggttgatggatggaatcgaacgcgcagaaatttta
ccgcagacaagtttacatcagttgtttgcagatacgttaaaacatgcggttcaatcgcgt
gtttatctctcgttgtttcaaaaaacaatgggaagccatcgactctacctttcaactaat
tttgtacataagcaaatgcaacaattccatggtcaaatgccggcagtccaaacagaaatg
gcaagttggcaaaataatgaaatggccactattgtggttgtacccacggaagagagacta
ggtaaaatcagccagacatttagcgactacgatatttcaacgcaattattgaacgaaacc
gatgaattggtatttgggcaagtgcaacttgttgtggggcaattaaacgaaggttttgaa
ttacctttgggacgtctcgttgtagtgacggatgctgaattatttggtcataaaacaaaa
ccaacgatgaaaagacagaaaatgtcgaacgcagaacgtattaaagattataatgagctc
aaagtaggcgattacgttgtgcatgtcagccatggtgtgggccgttatgtcgggatggaa
acattagatataaaaggtgtacacaaagattatttattaattatttatcgtggtgaagat
aaactatatattcctgttgaacaactagaattggtgcaaaaatatgtcggttctgaaggt
aaaacaccgaagttgaataaattaggtggtgcagagtggaaacgtgtcacagcgcgtgtt
caaaaatcagtcatcgatattgcggatgatttgattaagctttatgctaaacgagaagct
gaaaaaggttttgcttatagtccagatgacacattaatgcatgagtttgaagaagccttt
ccttatgaagcaacagaggatcaagggcgctctgttaaagaaatcaaacgtgatatggaa
agtattcgtccgatggatcgtttgttagtcggagatgtaggatatggcaagactgaagtt
gcactaagggcagcgttcaaggcgatgatggatggcaaacaagtggctttcttggtgcca
accaccattttagcgcaacaacactatgaaacgatgatttcccgctttgctaattttccg
atcaatattggtatactgagccgctttcgtactaagaaacaacaagaagagacactagct
ggtttaggttctggcaaaattgatatcgttgttggaacacatcggttattatcaaaagat
gtcgcttacagggacttgggattgttagtcgtcgatgaagaacagcgttttggtgtaact
cacaaagagaaaattaaacagttacgagcaaatgtggatgtactgacattgacagcaaca
ccgataccgagaacgttacacatgtcgatggtaggtgttcgtgatttgtctgttattgaa
acgccaccagccaatcgctaccccatccaaacttatgtggtcgaacaaaatgatatcttg
atcaaagaagcaattgagcgagagttatctcgttcaggacaagtgttttatctacataac
cgtgtggatagtatcgttcaaaaagcagatcgtattcaagctttagttccgaatgcacgc
gtgggatatgcacatggacaaatgactgaaaatgaattggaatcgactattttacgcttt
ttagaaaatgaatttgacgtactggtaacgacaacaattatcgaaacgggtgtcgatatc
cctaatgttaatacattgttagttgaaaatgcagaccgtatgggcttatcacaattgtat
caattaagagggcgtgtcggtcgttcaaatcgtattgcttatgcgtacttcatgcacgaa
aaaaataaagtgttgcgcgaggaagctgaaaaacgtctccaagcaattaaagagtttaca
gaattaggctcaggctttaaaatagcgatgcgtgatcttagcatacgaggtgccggaaat
atcttaggcgcacaacaacatggctttattgattcagtaggatttgatctttactcgcaa
atgttgagcgatgctatcaatgagcgtatgccacaagttggtgaaaaacaaggcgaatcc
agcacagtagaaattgacttgccactggatgcgtatattcctgactactacatcgaagac
agtcgccaaaaaattgaaatgtacaaacgcttccgtcagataacgacgacggaaaatatt
atgcaattacaagatgatatgattgatcgttttggggagtacccacaacaagtcgctgat
ttgtttatcatttcagaaattaaattgaatgctgaaaaagtaggtattcaaacaattaaa
ttgaagaaaaatagtatcgagttattactgagtgaagaagcaacacaattaatagatggt
gcaaaagtgtttaaagctttggatatgttgggacgtcagtcaggtgttggaatgacagaa
cagcagctagcggtgacgtatcgtcttccaggcacagacccagcacaatggttgccaact
ttaagtaaatttattgaacaattaacgtatgcaactaaggatgaaataaagtaa
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