Brochothrix thermosphacta: CNY62_06435
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Entry
CNY62_06435 CDS
T05089
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bths
Brochothrix thermosphacta
Pathway
bths03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bths00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CNY62_06435 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bths03021
]
CNY62_06435 (rpoC)
03400 DNA repair and recombination proteins [BR:
bths03400
]
CNY62_06435 (rpoC)
Enzymes [BR:
bths01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CNY62_06435 (rpoC)
Transcription machinery [BR:
bths03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CNY62_06435 (rpoC)
DNA repair and recombination proteins [BR:
bths03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CNY62_06435 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Apocytochr_F_C
ManC_GMP_beta-helix
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ATF26059
UniProt:
A0A1D2KGW4
LinkDB
All DBs
Position
1345200..1348805
Genome browser
AA seq
1201 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
SCGKYKRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTEAGDTALDKKQLLSEREYRAYREKYGQSFQAGMGAEAIKRLLD
AVDLEGEVTELKEELKSAQGQRRTRAIRRLEVLEAFRHSGNKPSWMVLDVLPVIPPEIRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDGLIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVCGPSLKMYQCGLPRE
MAIELFKPFVMRELTQRGLAHNIKSAKRKIERHSPEIWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSPEAQAEARILMLAANHIL
NPKDGKPVVTPSQDMVLGNYYLTLERENIVGEGLVFTDINEAMIAYQNGYVHLHSRVAVA
AASLGNETFTAEQNNQLLITTVGKMIFNSILPPSFPYLNEPTKTNLEVATPSQYFVPTTT
DVKAHIEKQAFLLPFKKKNLEEIIAQIFKLFHITETSKMLDRMKDQGFKYSTLAGITVGI
SDIIVVKDKPEILAASHDEVDNVTKMFKRGLMTDEERYERVIAIWNAAKDQLQNKLIAGL
DRLNPIFMMQDSGARGNISNFTQLAGMRGLMADPSGRIVELPITSNFREGLNVLEYFISS
HGARKGLTDTALKTADSGYLTRRLVDVAQDVIVRETNDGSDHGLLVSDIVEGPEVIETLT
ERLEGRYSAKTVRHPETNEVMIRPDELFTQEIAEAIPAAGIKEVWIRSVFTCNTKHGVSK
ISYGKDLSTGSEVEVGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIF
EARNPKGHAVITELTGEVKAIEEKANRQREITVTGTQETRTYTVPMVARLKVKVGDAVRR
GDPLMDGSIDPKELLHVTDVITVENYLLGEVQKVYRMQGVEIADKHIEVMVRQMLRKVRV
LDPGETDILPGTLMDISAFKDANTDTILSGGQPATGRPVLLGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDNLIGLKENVILGKLVPAGTGMPKYRKAEAKLVGAQVATATEGSA
E
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgttaataattttgagtatatgaaaataggtttagcgtcacctgataaaatc
cgctcgtggtcttttggcgaagtcaaaaaacctgaaacaattaactaccgtactttaaaa
ccagaacgtgatggtcttttctgtgagcgtatctttggaccaaccaaagactgggaatgt
tcatgtgggaaatacaaacgcgtacgttataaaggtgttgtctgcgatcgttgtggcgtt
gaagtcacaaaatcaaaagtccgccgtgaacgtatgggacacatcgaacttgctgcacca
gtatcacatatttggtactttaaaggaatcccaagccgtatgggtcttgtcttagacatg
tctcctcgtgcgttagaagaagttatctactttgcatcatatgtagtaacagaagctggc
gatactgctttagataaaaaacaattattatcagaacgcgaataccgcgcataccgcgaa
aaatatggtcaatctttccaagcaggaatgggtgctgaagcaatcaaacgtcttttagac
gctgttgatttagaaggcgaagttactgaattgaaagaagagcttaaatcagctcaaggt
caacgtcgtacacgtgctatccgtcgtcttgaagtattggaagctttccgtcactctggc
aacaagccgagctggatggtattagacgtgttacctgttattccaccggaaattcgtccg
atggtacaacttgaaggtggccgttttgcaacaagtgatttaaatgatttatatcgtcgt
gttatcaaccgtaacaaccgtttgaaacgtttactagacttaggtgctccaagcatcatc
gttcaaaacgaaaaacgtatgttacaagaagctgttgatggcttgattgataatggtcgt
cgtggccgtccagtaactggaccaggtaaccgtccgttgaagtcattgtcacacatgtta
aaaggtaaacaagggcgtttccgtcaaaacttacttggtaaacgtgttgactactctggt
cgttcagtaatcgtctgtggaccttcattgaaaatgtaccaatgtggtttaccgcgcgaa
atggcaattgaattattcaaaccattcgtaatgcgtgaattaactcaacgtggattagct
cacaacatcaagagcgctaaacgtaaaatcgaacgtcactcaccagaaatttgggacgtt
ttagaagacgttatccgtgaacacccagtgttacttaaccgagcacctacgcttcaccgt
ttaggtatccaagcgtttgagccaatcttagttgaaggccgtgcgattcgtcttcatccg
ttagtatgtactgcatacaacgccgatttcgatggtgaccaaatggcggtccatgtacct
ctatcaccagaagcacaagctgaagcacgtatcttaatgttagcagcaaaccacattctg
aaccctaaagatggtaaaccagttgtaacaccatctcaagatatggttcttggtaactac
tacttaacattagagcgtgaaaacattgttggtgaaggtcttgtctttactgatattaac
gaagcaatgattgcttaccaaaacggatacgtgcatttgcactctcgtgttgcggttgca
gcagcttcattaggaaatgaaacgttcacagctgagcaaaacaaccagttgttgatcact
actgttggtaaaatgattttcaactcaatcttaccaccatcattcccttacttgaatgaa
ccaactaaaacgaatcttgaagtggctacgccgtctcaatattttgttcctactacaaca
gatgtgaaagcacatattgaaaaacaagcgttcttattacctttcaaaaagaaaaacttg
gaagaaattatcgctcaaattttcaaattgttccacattactgaaacttcaaaaatgtta
gaccgcatgaaagatcaaggttttaaatactcgacacttgctggtattacagttggtatc
tctgatatcatcgtcgtgaaagataaacctgaaattcttgctgcttctcatgatgaagtg
gataacgtaacaaaaatgtttaaacgtggtttaatgacagacgaagagcgttatgaacgt
gttattgcgatttggaatgcagcaaaagatcagttacaaaacaaactgattgcaggctta
gatcgcttaaacccaatcttcatgatgcaagactctggtgcccgtggtaacatctctaac
tttacgcagttagctggtatgcgtggtttgatggccgatccttctggacgtatcgttgaa
ttaccgatcacatctaacttccgtgaaggtctaaacgttcttgaatactttatctcatca
catggtgctcgtaaaggtttaacggatacagctcttaaaacagccgattcaggttacctt
actcgtcgtcttgtagatgttgcgcaagatgttatcgtgcgtgaaacaaatgacggttct
gatcacggtcttcttgtttctgatattgttgaaggaccagaggttatcgaaacattaact
gaacgtcttgaaggtcgttattctgcgaagacagtacgtcatccagaaacaaacgaagta
atgattcgtcctgatgaattattcacacaagaaattgctgaagcaattcctgctgctggt
attaaagaagtatggattcgttctgtatttacatgtaatactaagcacggtgtaagtaaa
atcagttacggtaaagacttgtcaaccggctcagaagttgaagttggtgaagcagttggt
atcgttgccgcacaatctatcggtgagcctggtacacagttaacaatgcgtactttccat
actggtggggttgccggatcggatattacacaaggtttacctcgtattcaagaaatcttc
gaagcacgtaaccctaaaggtcacgctgttattactgaattaactggtgaagttaaagca
atcgaagaaaaagctaaccgtcaacgtgaaatcactgttacaggtacacaagaaacacgt
acttatactgtaccaatggttgctcgcttgaaagttaaagtcggagatgcagttcgtcgt
ggtgatccattgatggacggttcaatcgaccctaaagaattacttcatgtaactgatgtt
atcactgttgaaaactatctattaggtgaagttcaaaaagtttaccgtatgcaaggtgtt
gaaatcgccgataaacatatcgaagtaatggttcgccaaatgcttcgtaaagtacgtgtt
cttgatccaggtgaaactgatattttaccaggaacattaatggatatcagcgcgtttaaa
gatgccaacacagatacaatcctttctggtggtcaaccagctacgggtcgtccagtgtta
ctcggtattactaaagcatctcttgaaactgaatcattcttatctgcggcttcattccag
gaaacaacacgtgtgttaactgatgcagcaattaaaggtaagcgcgataacttaatcgga
ttgaaagagaacgttatccttggtaaacttgtaccagctggtacaggtatgcctaaatat
cgtaaagctgaagctaaactcgtaggcgcacaagttgctactgcgacagaaggttctgct
gaataa
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