Brochothrix thermosphacta: CNY62_12425
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Entry
CNY62_12425 CDS
T05089
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bths
Brochothrix thermosphacta
Pathway
bths03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bths00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNY62_12425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bths03019
]
CNY62_12425
Messenger RNA biogenesis [BR:
bths03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CNY62_12425
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
ODP
Motif
Other DBs
NCBI-ProteinID:
ATF27105
UniProt:
A0A1D2KR52
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Position
complement(2556309..2557985)
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AA seq
558 aa
AA seq
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MTIKPVENIKILSLGGVAELGKNMYVVEVNDDIFILDAGLRFPEDELLGIDVVIPDIKYL
EENQDRIKAVFLSHGHEDAIGALPYLLKKINNIPVYGTELTVALARAAIKEHKDLKYNRF
HVVHARSRLSFEQINVSFFATTHSIPDSIGTVLHTADGAIVYTGDFKFDQSSLPGYQTDL
GQIAKIGEKGVLALLSDSSEAEHPGYTSSDSVAAQEMLKGFKKASGRIIVAVVASNVSRL
QQVFDAASATNRRVAILGKELERVITVSAKLEKLVIDNEERIVPLKDIEDVADDNLVIIE
SGHLGEPILQLNKMAKQTHRLVNVRPGDTVFIGATNNPATETLLAKTVDLIYRNDAAVST
FSKDIFISGHASQEELKMMMNLLKPKYFVPIHGEYRMLIEHTKVARSIGFTNEQIFIINK
GDILEYKEGRFAMGSRVFSGNTLIDGLGVGDVGNIVLRDRKLLSEDGIFIVVVTISRRQK
RIISGPEMMSRGFIYMRESEALIESATKMAEKIVLETLEDKNFEWANLKQAIRDKLNRYL
FEQTRRRPMILPVIMEVN
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
ttgacaattaaaccagtcgaaaacatcaaaattttatctctcggtggcgtagcggaatta
ggaaaaaacatgtatgtagtagaagtaaacgatgatatttttatcctagatgccggatta
cgtttcccagaagatgaattgctcggtattgatgtcgttatacctgatattaaatattta
gaagaaaaccaagatcgtattaaagctgtattcttatctcacggacatgaggatgcaatc
ggagcgttaccttacctcctcaagaaaatcaacaacatcccagtttatgggacagaatta
acagttgcccttgctcgtgcagcaattaaagagcacaaagacttaaaatacaaccgtttc
catgtggtacatgcgcgttctcgtctatcatttgaacaaatcaatgtatctttctttgcg
acaacacactctattccagattcaataggaactgtattacatacagcagatggtgcgatt
gtttatactggtgatttcaaatttgatcaatcttcattacctggctatcaaacggattta
ggtcaaattgctaaaatcggtgaaaaaggtgtgttagcgttgctttcagacagttctgaa
gcagaacaccctggatacacttcaagtgactctgtcgctgctcaagagatgcttaaaggc
ttcaagaaagcatctggacgtattatagtggctgttgttgcttctaacgttagtcgctta
caacaagtgtttgatgcagctagtgcaacaaaccgtcgcgttgccattcttggtaaagaa
ttagaacgtgttattacagtttctgctaaactagagaaattagtaattgataatgaagaa
agaattgtgcccttgaaagatattgaagatgtcgctgatgataaccttgttattattgaa
agtggccatcttggagagcctattttacaattgaacaaaatggctaaacaaacacaccgt
ttagtgaatgtacgccctggcgatactgttttcatcggtgcgacaaacaatccagcaacg
gaaactttattggctaaaacagtcgatttaatctaccgtaacgatgctgctgtttcaaca
ttctcaaaagatatctttatctctggacacgcaagtcaagaagagctgaagatgatgatg
aatctcttgaaaccaaaatattttgttccgattcatggtgagtaccgtatgttaattgag
catacaaaagtagcacgctcaatcggttttacaaatgaacaaatctttatcattaacaaa
ggtgatattctagaatacaaagaaggccgctttgcaatgggaagccgtgtattctctggt
aacacattaattgatggtttgggtgttggtgatgttggtaatatcgtcttacgcgatcgt
aaattattatcagaagatggtattttcatcgttgttgttacaattagccgccgtcaaaaa
cgcattatctcaggacctgaaatgatgtcacgtggcttcatttacatgcgtgaatcagaa
gcactaattgaatcagctacaaaaatggctgaaaaaattgtgttagaaacgcttgaagat
aaaaacttcgaatgggctaaccttaaacaagcgattcgtgataaattaaaccgttactta
tttgaacaaacacgtcgacgtccaatgattttaccagtcattatggaagttaactaa
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