Bacillus thuringiensis serovar thuringiensis IS5056: H175_ch5239
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Entry
H175_ch5239 CDS
T02474
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
btht
Bacillus thuringiensis serovar thuringiensis IS5056
Pathway
btht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H175_ch5239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btht03019
]
H175_ch5239
03016 Transfer RNA biogenesis [BR:
btht03016
]
H175_ch5239
Enzymes [BR:
btht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H175_ch5239
Messenger RNA biogenesis [BR:
btht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H175_ch5239
Transfer RNA biogenesis [BR:
btht03016
]
Prokaryotic type
tRNA degradation factors
H175_ch5239
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
OB_PDCD11
OB_Dis3
DUF8447
Motif
Other DBs
NCBI-ProteinID:
AGG03948
LinkDB
All DBs
Position
complement(5100138..5102582)
Genome browser
AA seq
814 aa
AA seq
DB search
MEEITQEHIDKLLLFMREEAYKPLTIQELEEAFGIEGSEGFKDFVKALVMMEEKGLVIRT
RSNRYGLPEKMNLVRGKLIGHARGFAFVVPDEKKTGDDDLFIPPTELNGALHGDTVLARL
SSQSSGSRQEGSIVRILERGTKELVGTYTESKNFGFVIPDNKRWTSDIFILKSASMGAVE
GHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLAFPEEVMEHANSV
PETISEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQE
GSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKH
EIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAI
DFDFKEAKVLVDEEGKPTDVVMRDRSVSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE
DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA
RYDSESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYIINGKVDSETQAKWRENLPEI
AEHSSNMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVH
VSYLTDDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDERAIDFEIVGMKGTPRR
KFKDRPVVIEQPRTGRKKRGGRSERSNERGGERGTGRKFDRGGKGKGRGSASASTSASTS
ASASQPGKKDGNGKKKKGFFENVPGFKKKKKKRK
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
ttggaagaaatcacacaagaacatattgataagttgttattatttatgagagaagaagcg
tataaaccgctaacgatacaagagttagaagaggcatttggaattgaaggttctgagggc
tttaaagattttgtaaaggcacttgtaatgatggaagagaagggacttgttattcgtaca
cgtagcaaccgttacggtcttcctgaaaagatgaatttagtaagaggtaagttaattgga
catgcacgtggctttgcattcgttgtaccagacgagaagaaaacgggagacgatgatctt
ttcatccctcctacagaattaaacggtgcacttcatggcgatacagtattagcacgactt
agttctcaatcgagcggttcacgtcaagaaggttcaattgtacgcattttagagcgtgga
acgaaagaacttgttggtacatatacagaatcgaaaaactttggctttgttatacctgac
aataagcgctggacgagtgatatctttatcttgaaaagtgcatcaatgggtgctgtagaa
ggtcataaggtagttgtgaaaattacgagctacccagaaaaccgtttaagtgcagaaggt
gaagttattcaaattctaggtcataaaaatgatccaggagtagatattttatctgtcatt
cataaacatcatttacctttagcattccctgaagaagtgatggagcatgcaaacagtgta
ccagaaacgatttcagaagaagatttaaaagatcgccgtgatttacgtgatcaaatgatt
gtaacgattgatggtgcagatgcgaaagatttagatgacgctgttacagtaacgaagctt
gagaacggcaattacaagctaggcgttcacattgcggatgtaagtcattacgttcaagaa
ggttctccaattgatgtagaagcagcggaaagagcgacaagtgtgtatcttgttgaccgt
gtaattccaatgattccacatcgtctatctaacggtatttgctcattaaatccgaaagta
gaccgtctgactttatcttgtgaaatggaaatcaacaacttaggtgatgttgttaaacac
gagattttccaaagtgtgattaaaacgacagagcgtatgacgtatgctgacgtaagaagc
attttagaagatgaggacgaagagttaattaagcgttatgagccattagtaccgatgttt
aaagagatggggcaattggcacaaattctacgtgaaaaacgtatgcgccgtggtgcaatt
gactttgactttaaagaagcgaaagtattagtagatgaagaaggaaaaccgactgatgtt
gttatgcgcgatcgttctgtatcagagaagttaattgaagaatttatgcttgttgcgaac
gaaacagtagcagagcacttccactggatgaacgtaccgtttatgtaccgtgtccatgaa
gatccgaaagaagataagcttgagcgtttcttcgagtttgtaacgaacttcggatatgcg
gtaaaaggacgtgcgaatgaagtgcaccctcgtgcgctgcaacaaattcttgaaatggtt
caaggacagccagaagaagtagttatttcaacggttatgcttcgttctatgaagcaagca
cgttacgattcggagagcttaggacatttcggcttatcaactgagttctacacgcatttc
acatcgccaattcgtcgttacccagatacgattgttcatagattaattcgtgaatacatc
attaacggtaaagtcgacagtgaaacacaagcaaaatggcgtgaaaacttaccagagatt
gcagagcactcttctaatatggaacgccgtgctgttgaagcagagcgtgaaacagacgaa
atgaaaaaagcagagtatatggtcgataagatcggtgaagagtatgacggtatgattagc
tctgtaacaaacttcggtctgtttgtagagcttccaaatacgattgaaggtcttgtacac
gttagctacttaacggatgattactatcgttacgacgaaaaacatttcgcaatgatcgga
gaacgtacaggtaacgtattccgcatcggtgatgaaattacaattcgcgttattaacgta
aataaagacgagcgtgcaatcgactttgaaatcgttggtatgaaaggcacacctcgccgt
aagttcaaagatcgtccagtcgttatcgagcagccaagaacaggcagaaagaaacgcggt
ggacgtagcgagcgcagtaatgagcgtggcggtgaacgtggcacaggtagaaaatttgac
cgtggtggcaaaggaaaaggaagaggatccgcatctgcatccacatccgcatccacatcc
gcatccgcaagtcagccagggaaaaaagatggtaacggcaagaagaaaaaaggatttttc
gaaaacgtaccaggattcaagaagaaaaagaaaaagcgtaagtaa
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