Caldibacillus thermoamylovorans: CQJ30_00310
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Entry
CQJ30_00310 CDS
T06263
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bthv
Caldibacillus thermoamylovorans
Pathway
bthv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bthv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CQJ30_00310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bthv03400
]
CQJ30_00310 (mfd)
Enzymes [BR:
bthv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CQJ30_00310 (mfd)
DNA repair and recombination proteins [BR:
bthv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CQJ30_00310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
DUF445
HPD
UB2H
Motif
Other DBs
NCBI-ProteinID:
AWI10782
LinkDB
All DBs
Position
58444..61980
Genome browser
AA seq
1178 aa
AA seq
DB search
MRGLLTTLMQKDDIASITSGINEGLNEQLVAGLSNSARTVFMASIYQKMNKPLLIITYNL
LQAQKLYEDLVHLISDEVFIYPANELTIADLGISSPELRSQRIETLNFLNSNKKGVVIAP
IAGIRRILPPKAIWAEHIIQWQLDDEINLEQSIQKFVQMGYVRSEMVTAPGEFSVRGGII
DIYSLTESNPIRIELFDNVIDSIRYFSTDNQRSMEKLSEVTIGPATEIILELDHLQRIAD
KLEKALADSLKKIKDEKVKESLVTQTEQEIEQLRSGQISDEIFKYLSFAYEKPGSLLDYI
SENSIVFMDEISRVSEMKETLDKEEAEWHTSLLDEGKVVHSITISHDVWKILHGSKKPIV
YFSLFLRHIQHTSPQNILNLSSKQMQNFHGQMNVLKSEMERWKKSGYTVIFLGADDSRTE
KIETVLADYSIEAVNNWDGEQLIIGKTQIIKGQLNSGFEFPMEKIAVITEGELFNKKVKK
HSHRTQKISNAERIKSYSELNIGDYVVHVNHGIGKYLGIETLEINGIHKDYMKIKYQGTD
KLYVPVEQINLVQKYVGTEGKEPKLYKLGGSEWKRVKRKVESSVQDIAEDLIKLYAEREA
SVGYAFSPDTELQREFEATFPYKETQDQLRSIAEIKKDMERPRPMDRLLCGDVGYGKTEV
ALRAAFKAICDGKQVAFLVPTTILAQQHYETMRERFQDYPIKIGVLSRFRTRKEQQETIK
GLKNGTVDIVVGTHRLLSKDITYHDLGLLIIDEEQRFGVTHKEKIKKLKTNVDVLTLTAT
PIPRTLHMSLLGVRDLSVIETPPENRFPIQTYVMEMNPGLVKEAIERELARHGQIYYVYN
NIDDIDRKVEELSMLVPDARFIYAHGRMNAMELENVMLSFLNGEADVLVSTTIIETGVDI
PNVNTLIVENADRMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKVLTEVAEKRLQTIKEFT
ELGSGFKIAMRDLSIRGTGNLLGAQQHGFIESVGFDLYSQMLKEAIEKRKGDEPDKQDFP
VEIDLQIDAYIPDQYIHDGYQKIEMYKRFRAIANMEDIHELQDEMVDRYGDYPEEVNNLF
LISEIKIYAKQAGIELIKKDKDGIHLIFTETVTKDIQIKDIVELCKPYGRMVGYGMEGEK
FKIVIYNNSQIEQNWFSTLESILKGLPQTVEREVKTVS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagagggttattaaccactttaatgcaaaaagacgatattgcgtcgattacaagcgga
ataaatgaaggattaaacgaacaacttgttgccggtttatctaattcggctagaaccgta
tttatggctagtatttatcaaaagatgaataagcctcttctgatcatcacctataattta
ttgcaagcacaaaagctatatgaagatttggttcatcttatatcagatgaagtgttcata
tatccggcaaatgaattgacaatcgccgacctgggcatatccagtcctgaattacgttcg
cagcgaattgaaacattaaattttttgaatagcaacaaaaagggtgtagttatagcgccc
atcgccggtataaggagaattttacccccaaaagcaatatgggctgaacatatcattcag
tggcaattggatgatgaaattaatctggaacaatccattcaaaaatttgtccaaatgggt
tacgtacgttcagaaatggttactgcacccggggagttcagtgttcgtggcggtattatt
gacatttattcattgacagaaagcaatccgattcgaattgagctgtttgacaatgtcatt
gattccatccgttatttttctactgataaccaacgctctatggaaaaactttcggaagtg
acaattggcccggcaacagaaatcattttagagctggatcatcttcaacgaatagcagat
aaacttgaaaaagctctggctgatagtttaaagaaaataaaagatgaaaaggtaaaagaa
tctcttgttacccaaaccgaacaagaaattgagcagctgcgatccggacaaatttctgat
gagatttttaaatatctatcatttgcctacgagaaaccaggaagtttactagactatata
agtgaaaattccatcgtatttatggatgaaatcagtagagttagtgaaatgaaagaaaca
cttgataaggaagaagctgaatggcatacaagtttattggatgaaggaaaagttgttcat
tcgataacaatcagccatgatgtatggaaaatcttacatggttcgaaaaaaccgattgtt
tatttttcactctttttacgtcatattcaacatacaagtccgcaaaatatattaaattta
tccagtaaacaaatgcaaaatttccacggacaaatgaacgtgttgaaatcagaaatggaa
cgttggaaaaaaagcggatatacagttatttttttaggggcggatgatagtcggacagag
aaaattgaaactgttttagcggattactcaattgaagcggtaaataattgggacggcgaa
cagctaattataggaaagacgcaaattataaaaggacagttaaacagcggatttgaattc
ccgatggagaaaatagccgttattactgagggagaattatttaataaaaaggtaaaaaaa
cattctcaccgaacacaaaaaatttccaatgcagaacggattaaaagttattcggagctc
aatatcggggattacgtagttcatgtgaatcacgggattggtaagtatttaggaattgaa
acgctggaaattaacggaatccataaagactatatgaaaattaaatatcaaggtactgac
aagctttacgttcctgttgaacaaattaatcttgtacaaaaatatgtcggtacggaagga
aaagaaccaaagctgtataaactgggcggatctgaatggaagcgcgtgaagagaaaggtt
gaatcttctgttcaggatattgctgaggatttaattaaattgtatgcagaacgtgaagcc
tctgttgggtatgccttttctccggataccgaattacaacgggaatttgaagcaacattt
ccatataaagaaacgcaagatcaattacggtcaatcgccgaaattaaaaaagatatggag
agaccgcgcccaatggaccggcttttatgtggggatgttggttacggcaaaactgaggtg
gcattacgggctgcttttaaagcaatttgtgacggtaaacaagtggcttttcttgtacca
acaacgattttggcacagcaacactatgaaacaatgcgggagagatttcaagattatccg
attaaaattggtgtattaagtcgctttcgtacacgtaaagagcagcaggagacgattaaa
ggtctgaaaaatggaaccgttgatattgttgtcggtacccatcgcttattatctaaagat
attacttatcatgaccttggactattaatcattgatgaagagcaaagatttggtgtaact
cataaagaaaaaattaaaaaattaaaaacaaatgtggatgtcttaacgttaacggcgaca
ccaattcccaggacactccatatgtctttactgggcgttcgtgacctgtccgttattgaa
acaccgccggaaaatcgttttcctatccaaacatatgttatggaaatgaaccccggtctt
gtaaaagaggctattgaaagggagctggccagacacggtcaaatttactatgtttataat
aatattgatgatattgaccggaaagttgaggaactatccatgcttgtaccggatgccaga
tttatttatgcgcatggaagaatgaatgcaatggaactggaaaatgttatgttgagcttt
ttaaatggtgaagcagatgtattagttagtacgaccattattgaaacgggagtagatatc
ccgaatgtcaacacattaatcgtagaaaatgcagatcgtatgggtctttcccaactttat
caattacgaggtcgagtcggacggtcgaaccggattgcctatgcgtattttacttaccgt
aaagataaagtccttactgaagtagccgaaaagcggttacagacaattaaggagtttact
gaattaggttcaggctttaaaattgcaatgcgcgatctatccatacgcgggacgggaaat
ttgttgggggcgcaacaacatgggtttatcgaatcagttggatttgatctttattcacaa
atgttaaaagaagcgatagaaaaacgaaaaggtgacgaacctgacaaacaagattttccg
gttgaaattgatcttcaaatagacgcttatataccggatcaatatattcatgacggttac
caaaagattgaaatgtataaacggttccgggcaattgctaacatggaagatatacatgaa
ttgcaagatgaaatggttgatcgatacggagattatccggaagaagtaaataatttattt
ttgatttccgagattaaaatttacgccaaacaggcaggaattgaattgattaaaaaggat
aaagatggaattcatctgatctttactgaaacggtaacgaaagacattcaaattaaagac
attgtggaactatgtaaaccatatggtcgcatggtaggttacggtatggaaggggaaaag
tttaaaatcgttatctataataatagtcaaatcgaacaaaattggttctctactcttgaa
tcgattttaaaaggattaccgcaaaccgttgaacgggaagtaaaaacagtatcataa
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