Burkholderia thailandensis E444: BTJ_1979
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Entry
BTJ_1979 CDS
T03112
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
btj
Burkholderia thailandensis E444
Pathway
btj02020
Two-component system
btj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
btj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BTJ_1979 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BTJ_1979 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
btj03021
]
BTJ_1979 (rpoN)
Transcription machinery [BR:
btj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BTJ_1979 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF2344
HTH_IclR
HTH_38
HTH_23
DUF5805
Motif
Other DBs
NCBI-ProteinID:
AHI79390
LinkDB
All DBs
Position
1:2275708..2277216
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AA seq
502 aa
AA seq
DB search
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAIAQNPLLENDDDWIASPLRV
AADGSVIAQTPASSSPEPMSGASNGTTATNERTERDETAGVDEYDGYSADGGDASQWNLD
DFGRSPAASDDDDLPPMQIHETSTSLRDHLMAQLRVTQASPRDRALVTFLIESLDDDGYL
SASLDEVLADLPAELEVDVDELNAALALVHSFDPAGVGARSASECLKLQLLRLDPSPTRT
LALDIVSQHLELLAARDFTRLRKQLKATDDELRDAHALIRSLEPFPGAAYGKAEADYVVP
DIIVKKAGQSWQAELNPEVVPKLRINHLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQ
QRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYMLTPF
GTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVA
RRTVAKYREALKIPAVNLRKSL
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccagtctccaacttcgcctgtcgcagcatctcgcgctcacgccccagcttcag
caatcgatccggctgctgcagttgtcgacgctcgaactgcagcaggaagtcgcaacggcg
atcgcgcagaacccgctgctcgagaacgacgacgactggatcgcgagccccctgcgcgtc
gcggccgacggctcggtgatcgcgcagacgcccgcgtcgtcctcgcccgagccgatgtcc
ggcgcgtcgaacggcacgactgcgacgaatgagcgcaccgagcgcgacgaaaccgccggc
gtcgacgaatacgacggctattcggccgacggcggcgacgcgagccagtggaatctcgac
gacttcggccgctcccccgccgcatccgacgacgacgatctgccgccgatgcagatccac
gaaacctcgacgtcgctgcgcgatcatctgatggcgcagttgcgcgtcacgcaggcgagc
ccgcgcgatcgcgcgctcgtcacgttcctgatcgaatcgctcgacgacgacggctacctg
agcgcgtcgctcgacgaagtgctcgccgatctgccggcggagctcgaagtcgacgtcgac
gaactgaacgcggcgctcgcgctcgtgcacagcttcgatccggcgggcgtcggcgcgcgg
tccgcgtccgaatgcctgaagctgcagttgctgcggctggatccgtccccgacgcgcacg
ctcgcgctcgatatcgtgtcgcagcatctcgaactgcttgccgcgcgcgatttcacgcgc
ctgcgcaagcaactgaaggcgaccgacgacgagctgcgcgacgcgcacgcgctgatccgc
tcgctcgagccgtttcccggcgcggcgtacggcaaggccgaagccgattacgtggtgccc
gacatcatcgtgaagaaggccggccagagctggcaggcggaactcaatccggaagtggtg
ccgaagctgcgtatcaaccatctttacgcgaacatcctgcgcaacagccggggcgatccg
agcgcgggatcgctgaagcagcagcttcaggaagcgcgctggctgatcaagaatattcag
cagcggttcgagacgatcctgcgggtcgcgcaggcgattgtcgaacgtcagaagaatttc
ttcgcgcacggcgaaattgcgatgcgccccttggttttgcgggaaatagctgatacgctg
ggcctacacgagtcgactgtctcccgtgtgacaaccggcaagtacatgctgactccgttc
ggcacacttgaatttaagtacttcttcgggtcgcacgtatcgacagacaccggaggtgcc
gcgtcgtcgacagcgatccgcgccctcatcaaacaactgataggagccgaagaccccaaa
tcccctctttcggacagtcgcatagccgagctgctagcggaacaagggttcgtggtcgcg
cgccgcacggttgccaaatatcgcgaagccctcaagatcccggcggtgaatctgcgcaag
tctctgtag
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