Bacillus thuringiensis serovar konkukian 97-27: BT9727_0048
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Entry
BT9727_0048 CDS
T00179
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btk
Bacillus thuringiensis serovar konkukian 97-27
Pathway
btk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BT9727_0048 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btk03400
]
BT9727_0048 (mfd)
Enzymes [BR:
btk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BT9727_0048 (mfd)
DNA repair and recombination proteins [BR:
btk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BT9727_0048 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AAT62190
UniProt:
Q6HPW4
LinkDB
All DBs
Position
54532..58068
Genome browser
AA seq
1178 aa
AA seq
DB search
MKMIGLLEQFYKNEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTH
NLYQAQKVHEDLVALLGEKDVWLYPVNELIASELGVASPELKAQRIEVLNRLAAGEHGII
VAPVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRG
GILDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKS
GIKHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYNEPASLI
DYLPEDGVVILDEISRIQETASHLESEEAEWYISLLGEGTIIQDLSFSHSFEEFLHHKKR
SFVYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDE
RVKKLQHILSDYDIDADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKK
VKKSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQG
NDKLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAER
EASKGYAYTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKT
EVAIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNET
IKGLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFL
YNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGV
DIPNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENT
VNVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGY
LLQIANIKVLAMKEQIELIKQNKFEVTILFSEQASQNIDGGKLFMLGNSFGRMIGLGMEG
SQLKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaatgataggtttattagagcaattttataaaaatgaagagatccaatcggtcatt
aatggactagaagatggtttaaaagagcaacttgtatcaggtatggcaacatcttctcgt
tcgttattaatggcggccttatataaaaaaacaaaaaaatcacaacttattgtgacgcat
aatttatatcaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaggat
gtatggctatatccagtaaatgaattgatagcatcagaacttggtgttgcaagcccagaa
ttgaaggcgcaacgtattgaagtgttaaatcgcttagctgcaggagaacatgggattatt
gtagcaccagttgcaggactacgcagatttttaccaatgaaagagttgtggaagcaaagg
caaatcgaaatcaatctagggcaagagattgatttagatacattcttgcatactttacat
catatcggctatgagcgtaagtctatggtagaagctcctggagaatttagtttacgcggg
ggaatattagatatttatccactaactgaagagctaccatttcgtattgaatttttcgat
acagaagttgattctattcgattatttgatgtggatgaacagcgctctcaagataaaaaa
gaaagtgttagatttggtccagcaacagagtttttattttcgcaggaagaattgaaatcg
ggaattaagcatcttgaagaaggtctgactaagacgatgcaaaaactttccgatgataag
ttgaagactacagtgcttgagacggtaagtcatgaaattgagatgttaaaaaacgggcaa
agtatagaacagatgtttaaatatttatctattttctataacgaacctgctagtctgata
gattatttaccagaagatggtgttgtgattttagatgaaatttcacgtattcaagaaaca
gcatctcatcttgaatcagaagaggcggaatggtatatatcccttcttggtgagggaaca
attattcaagatttatctttctctcattcgtttgaagaatttcttcatcataaaaaaaga
agttttgtatatttaacgttattcttacgtcatatagcgcatacacatccccaaaacatt
gtgaatgtgacatgtaaaacaatgcaagatttccatgggcagatgcagttgttgaaaact
gaaattgatagatggaacgaagggcattttacgaccgttgtgctaggtacagatgatgag
cgtgtgaaaaaactacaacatattttaagtgattatgatattgatgcagatattgtagag
ggcacagatatattattgcctggaaggttacaaattgctgtaggtgatttacatgcaggg
tttgaaatgccgatgcaaaagcttgttgtcattactgaaaaagagctttttcataagaaa
gttaaaaaatcacaacgtaagcaaaagttatcgaatgctgaacgcattaaaagttattcg
gaattaaaagttggggattatgtagttcatgtaaatcatggtataggtaaatttttaggt
attgagacattagagattaacggtgttcataaagattatttgaatattaaatatcaaggt
aatgataagttatacgttccaattgaacaaattgaccaagtgcaaaaatatgtaggatct
gaaggcaaggatccgaaagtttataaattgggcggaaacgattggaaaaaggtcaaaaca
aaagttgaaaaatctgtacaagacattgcggatgacctcattaaactctatgctgagcgc
gaagcttcaaagggttatgcatatacaccagatacggcagaacaacaagaatttgagtct
tctttcccgtatcaagagacagaggatcaattacgttctattgaagagattaaaaaggat
atggaacgcggacgtccgatggataggcttctttgtggtgatgtaggatatggaaagacg
gaagtagctattcgtgcggcgtttaaagcaattatggatgaaaaacaagttgcaatttta
gtgccgacaacgatccttgcacaacaacactatgaaacaattcgagagcgttttcaagat
tatccaatcaatataggattattaagtagattccgtacgagaaagcagcaaaatgaaaca
attaaaggtttaaaagatggcacggtagatattgtaatcggaacgcatcgtattttatct
aaagatgttacttataaagatttaggtcttcttattattgatgaagaacaaagatttggc
gtaacacataaagaaaaaattaaacaattaaaagcaaatgttgacgtattaacattaacg
gcaaccccgatcccgcgtacgcttcatatgtctatgcttggtgtacgtgatttatctgtt
attgagacgccgccggaaaatcgtttcccagttcaaacatatgtagttgagtataatcca
gcgttaatgcgagaggcgatagaacgcgagcttgcaagaggtgggcaagtttacttccta
tataatcgtgtggaggatatcgaacgaaaagcagatgaaatttcgatgttagttccagat
gcacgtgtcacttatgcacatgggaaaatgaacgaaagtgaattagagtctgttatgcta
tcgtttttagaagggcagcatgatgttcttgtaagtacaacgattattgagacaggtgta
gatattccgaatgtaaatacattaattgtatttgatgcagatcgtatgggattatcgcag
ttgtatcagcttcgtgggcgtgttggacgttctaatcgtgttgcatatgcttactttgca
tacaaacgagataaagtgttatcagaagttgcggagaagcgtctgcaagccattaaggag
ttcacagagcttgggtctggtttcaaaattgcgatgcgagatttatcaattcgtggtgca
ggtaacttgttaggagctgaacaacatggatttattgattctgtcggatttgatttatat
tctcaaatgttaaaagacgcaattgaacagcgtagaggaacagacggagttgaaaataca
gttaatgttgaaattgatttagaagtagatgcatatttaccagatgcttatatttcggat
agtaaacaaaaaattatgatgtataaacaatttagaggtgtttctgcgattgaagatatt
gaagagttgcaggaagagatgatagatagatttggtgattacccgcaagaagttggttac
ttattacaaattgcaaatattaaagtattggcaatgaaagaacaaattgaattaattaag
caaaataaatttgaagtaacaattctgttctcagaacaagcgagtcaaaatattgatggt
ggaaaattattcatgctcggaaatagttttggacgtatgatcggtttaggaatggaagga
tcacaattgaaaatcgtcatgaaaacaaatggcttagagacatcgaagtggttaacaatt
gctgaaaatttattaaaaggcttgccagatgtaaaaaaagaagtcataaatgcctaa
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