Bacillus thuringiensis Al Hakam: BALH_0048
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Entry
BALH_0048 CDS
T00429
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btl
Bacillus thuringiensis Al Hakam
Pathway
btl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BALH_0048 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btl03400
]
BALH_0048 (mfd)
Enzymes [BR:
btl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BALH_0048 (mfd)
DNA repair and recombination proteins [BR:
btl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BALH_0048 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
PRP8_domainIV
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABK83468
LinkDB
All DBs
Position
54442..58065
Genome browser
AA seq
1207 aa
AA seq
DB search
MACPKHFSVFFFQNICIKYSGLLFMLRGVLKMIGLLEQFYKNEEIQSVINGLEDGLKEQL
VSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVALLGEKDVWLYPVNELIA
SELGVASPELKAQRIEVLNRLAAGEHGIIVAPVAGLRRFLPMKELWKQRQIEISLGQEID
LDTFLHTLHHIGYERKSMVEAPGEFSLRGGILDIYPLTEELPFRIEFFDTEVDSIRLFDV
DEQRSQDKKESVRFGPATEFLFSQEELKSGIKHLEEGLTKTMQKLSDDKLKTTVLETVSH
EIEMLKNGQSIEQMFKYLSIFYNEPASLIDYLPEDGVVILDEISRIQETASHLESEEAEW
YISLLGEGTIIQDLSFSHSFEEFLHHKKRSFVYLTLFLRHIAHTHPQNIVNVTCKTMQDF
HGQMQLLKTEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIDADIVEGTDILLPGRLQ
IAVGDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDYVVHV
NHGIGKFLGIETLEINGVHKDYLNIKYQGNDKLYVPIEQIDQVQKYVGSEGKDPKVYKLG
GNDWKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQL
RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY
ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL
IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV
QTYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMN
ESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRS
NRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGF
IDSVGFDLYSQMLKDAIEQRRGTDGVENTVNVEIDLEVDAYLPDAYISDSKQKIMMYKQF
RGVSAIEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLAMKEQIELIKQNKFEVTILFS
EQASQNIDGGKLFMLGNSFGRMIGLGMEGSQLKIVMKTNGLETSKWLTIAENLLKGLPDV
KKEVINA
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttggcgtgtccaaagcatttttctgttttctttttccaaaatatttgcataaaatatagt
ggcttgctctttatgttgagaggggttttgaaaatgataggtttattagagcaattttat
aaaaatgaagagatccaatcggtcattaatggactagaagatggtttaaaagagcaactt
gtatcaggtatggcaacctcttctcgttcgttattaatggcggccttatataaaaaaaca
aaaaaatcacaacttattgtgacgcataatttatatcaagcacaaaaagtacatgaagat
ttagtggcgttacttggtgaaaaagatgtatggctatatccagtaaatgaattgatagca
tcagaacttggtgttgcaagcccagaattgaaggcacaacgtattgaagtgttaaatcgc
ttagctgcaggagagcacgggattattgtagcaccagttgcaggactacgcagattttta
ccaatgaaagagttgtggaagcaaaggcaaatcgaaatcagtctagggcaagagattgat
ttagatacatttttgcatactttacatcatattggctatgagcgtaagtctatggtagaa
gctcctggagaatttagtttgcgcgggggaatattagatatttatccactaactgaggag
ctaccatttcgtattgaatttttcgatacagaagttgattctattcggttatttgatgtg
gatgaacagcgctctcaagataaaaaagaaagtgttagattcggtccagcaacagagttt
ctattttcacaggaagaattgaaatcgggaataaagcatcttgaagaaggtctgactaag
acgatgcaaaaactttccgatgataagttgaagactacagtgcttgagacggtaagtcat
gaaattgagatgttaaaaaacgggcaaagtatagaacagatgtttaaatatttatctatt
ttctataacgaacctgctagtctgatagattatttaccagaagatggtgttgtgatttta
gatgaaatttcacgtattcaagaaacagcatctcatcttgaatcagaagaggcggaatgg
tatatatcccttcttggtgagggaacaattattcaagatttatctttctctcattcgttt
gaagaatttcttcatcataaaaaaagaagttttgtatatttaacgttattcttacgtcat
atagcgcatacacatccgcaaaacattgtgaatgtgacatgtaaaacaatgcaagatttc
catgggcagatgcagttgttgaaaactgaaattgatagatggaacgaagggcattttacg
accgttgtgctaggtacagatgatgagcgtgtgaaaaaactacaacatattttaagtgat
tatgatattgatgcagatattgtagagggcacagatatattattgcctggaaggttacaa
attgctgtaggtgatttacatgcagggtttgaaatgccgatgcaaaagcttgttgtcatt
actgaaaaagagctttttcataagaaagttaaaaaatcacaacgtaagcaaaagttatcg
aatgctgaacgcattaaaagttattcggaattaaaagttggggattatgtagttcatgta
aatcatggtataggtaaattcttaggtattgagacattagagattaatggtgttcataaa
gattatttgaatattaaatatcaaggtaatgataagttatacgttccaattgaacaaatt
gaccaagtgcaaaaatatgtaggatctgaaggtaaggatccgaaagtttataaattgggc
ggaaacgattggaaaaaggtcaaaacaaaagttgaaaaatctgtacaagacattgcggat
gacctcattaaactctatgctgagcgcgaagcttcaaagggttatgcatatacaccagat
acggctgaacaacaagaatttgagtcttctttcccgtatcaagagacagaggatcaatta
cgttctattgaagagattaaaaaggatatggaacgcggacgtccgatggataggcttctt
tgtggtgatgtaggatatggaaagacggaagtagctattcgtgcggcgtttaaagcaatt
atggatgaaaaacaagttgcaattttagtgccgacaacgatccttgcacaacaacactat
gaaacaattcgagagcgttttcaagattatccaatcaatataggattattaagtagattc
cgtacgagaaagcagcaaaatgaaacaattaaaggtttaaaagatggcacggtagatatt
gtaatcggaacgcatcgtattttatctaaagatgttacttataaagatttaggtcttctt
attattgatgaagaacaaagatttggcgtaacacataaagaaaaaattaaacaattaaaa
gcaaatgttgacgtattaacattaacggcaaccccgattccgcgtacgcttcatatgtct
atgcttggtgtacgtgatttatctgttattgagacgccgccggaaaatcgtttcccagtt
caaacatatgtagttgagtataatccagcgttaatgcgagaggcgatagaacgcgagctt
gcaagaggtgggcaagtttacttcctatataatcgtgtggaggatatcgaacgaaaagca
gatgaaatttcgatgttagttccagatgcacgtgtcacttatgcacatgggaaaatgaac
gaaagtgaattagagtctgttatgctatcgtttttagaagggcagcatgatgttcttgta
agtacaacgattattgagacaggtgtagatattccgaatgtaaatacattaattgtattt
gatgcagatcgtatgggattatcacagttgtatcagcttcgtgggcgtgttggacgttct
aatcgtgttgcatatgcttactttgcatacaaacgagataaagtgttatcagaagttgcg
gagaagcgtctgcaagccattaaggagttcacagagcttgggtctggtttcaaaattgcg
atgcgagatttatcaattcgtggtgcaggtaacttgttaggagctgaacaacatggattt
attgattctgtcggatttgatttatattctcaaatgttaaaagacgcaattgaacagcgt
agaggaacagacggagttgaaaatacagttaatgttgaaattgatttagaagtagatgca
tatttaccagatgcttatatttcggatagtaaacaaaaaattatgatgtataaacaattt
agaggtgtttctgcgattgaagatattgaagagttgcaggaagagatgatagatagattt
ggtgattacccgcaagaagttggttacttattacaaattgcaaatattaaagtattggca
atgaaagaacaaattgaattaattaagcaaaataaatttgaagtaacaattctgttctca
gaacaagcgagtcaaaatattgatggtggaaaattattcatgctcggaaatagttttgga
cgtatgatcggtttaggaatggaaggatcacaattgaaaatcgtcatgaaaacaaatggc
ttagagacatcgaagtggttaacaattgctgaaaatttattaaaaggcttgccagatgta
aaaaaagaagtcataaatgcctaa
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integrated database retrieval system
