Bacillus thuringiensis MC28: MC28_3266
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Entry
MC28_3266 CDS
T02263
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
btm
Bacillus thuringiensis MC28
Pathway
btm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MC28_3266 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btm03019
]
MC28_3266 (rnjA)
Messenger RNA biogenesis [BR:
btm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MC28_3266 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AFU14688
LinkDB
All DBs
Position
3194596..3196263
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AA seq
555 aa
AA seq
DB search
MKFLKNDQVAVFALGGLGEIGKNTYAVQFQDEIIIIDAGIKFPEDELLGIDYVIPDYTYF
VRNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLAIALIKNKLEEHGLLRKAKLY
EIQEDDVIKFKKTSVSFFRTTHSIPDSYGVVVKTPQGQVVHTGDFKFDFTPVGEPADLTK
MAEIGKDGVLCLLSDSTNSEVPNFTMSERRVGDSIQDIFRKVEGRIIFATFASNIHRLQQ
VVEAAVENNRKVAVFGRSMEAAIEIGQNLGYIRCPKDTFIDTSQLNRLPANKVVILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTISVSRTINMLYRAGANVVHGKL
SNIHTSGHGGQEEQKLMLRLIKPKYFMPIHGEYRMQRMHMKLANDCGIPEENCFIMDNGD
VLALRSDEASVAGKIPSGSVYIDGNGIGDIGNIVLRDRRILSEEGLVIVVVSIDMKEFKV
AAGPDIISRGFVYMRESSDLINDAQTLITTHLEKVMERKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttctaaaaaatgatcaagttgccgtttttgctctcggtggtcttggtgaaatc
ggtaaaaatacatatgctgttcaatttcaagatgaaattattataattgacgctggaatt
aaatttccagaagacgaactcctcgggatcgattatgtaatacctgattacacttatttt
gtgcgaaacgaagataaaattaaaggattattcattacacatggtcacgaagatcatatc
ggtggaatcccttatctattacgtcaagtaaacattccaatttacggtggaaaattagca
attgcactaataaaaaacaaattagaagagcacggattacttcgtaaagcgaagctttat
gaaattcaagaagatgatgttattaaatttaaaaagacatctgtttccttcttccgtaca
actcacagtattccggattcatacggagttgttgtgaaaacacctcaaggacaagtcgtt
catacaggtgatttcaaattcgatttcacaccagtcggtgagccagcagatttaacaaaa
atggctgaaatcggaaaagacggtgtactttgtctcttatctgacagtacaaacagtgaa
gttccaaactttacgatgtctgagcgccgtgttggcgatagtattcaagatatattccgc
aaagtagaaggtcgtattatcttcgcaacctttgcatcgaatatccatcgcttacaacaa
gttgttgaggctgctgttgaaaataatcgtaaagtagctgtatttggtcgaagtatggaa
gcagctatcgagattggacaaaaccttgggtatatccgatgtccaaaagatacattcata
gacacatctcaactaaaccgcctaccagctaataaagtggttattttatgtactggtagt
caaggtgaaccaatggcagcactttcccgtattgcgaatggtactcatcgtcaaattcaa
attattcctggcgacacagttgttttctcttcttcaccaatccctggtaacacaattagt
gtaagccgtacaattaacatgttgtatcgcgctggtgctaatgtagtccatggcaagctg
tcaaacattcatacgagtggacatggcggacaagaagagcaaaaactaatgctacgtcta
attaaaccaaagtatttcatgccaattcatggtgaatatcgtatgcaacgtatgcatatg
aaattagcgaatgattgcggtattccagaagagaactgtttcatcatggataacggagat
gttcttgccttgcgttcagatgaagcaagtgtagctggaaaaattccatctggttctgtc
tatattgatggaaatggtattggagatatcggtaatatcgtattacgcgatcgtcgcatc
ctttctgaagaagggcttgtaattgtagttgtaagcattgatatgaaagaatttaaagtt
gcagcaggacctgatatcatctcgcgtggtttcgtttatatgcgtgaaagcagcgattta
attaacgatgctcaaacattgattacaacacatttagaaaaagtaatggaacgtaaaaca
acacaatggtctgaaattaaaaatgagattacagacacattagcaccattcctatacgaa
aaaacgaaacgtcgcccaatgattttaccaatcattatggaaatataa
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