Bacillus thuringiensis MC28: MC28_4768
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Entry
MC28_4768 CDS
T02263
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btm
Bacillus thuringiensis MC28
Pathway
btm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MC28_4768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btm03400
]
MC28_4768
Enzymes [BR:
btm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MC28_4768
DNA repair and recombination proteins [BR:
btm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MC28_4768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AFU16190
LinkDB
All DBs
Position
4650902..4654432
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASEIGVASPELKAQRIEVLNRLAAGENGVIVA
PVAGLRRFLPIKELWKQKQIEINLGQEIDLEALLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEELKSGI
KHLEEGLTKTMQKLSDDKLKTAVLETVSHEIEMLKNGQSIEQMFKYLSIFYKEPASLIDY
LPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHSFEGFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETDDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETLK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSTIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTILFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagaaatacaatcggttattaatggg
ttagaagatggtttaaaagaacaacttatatcaggtatggcaacatcttctcgttcatta
ttaatggcagctttatataaaaaaacaaagaaatcgcaacttattgtcacacacaatcta
tatcaagcacaaaaggtacatgaagatttagtggcattacttggtgaaaaagatgtatgg
ctgtacccagtaaacgaattaattgcatcagaaatcggtgttgcaagtccagaattaaaa
gcgcaacgcattgaggtgctaaatcgtttagcggcaggagagaatggggttattgtagcg
ccagtcgcaggattacgtagatttttaccgataaaagaattatggaagcaaaagcaaatt
gaaattaatctagggcaagagattgatttagaggcgctcttgcatacattacatcatatt
ggctacgaacgtaagtcgatggtagaagctccgggggagttcagtttgcgcgggggcata
ttagatatttacccattaactgaagaattaccattccgtattgaattcttcgatacagaa
gtcgattctattcgattatttgatgtggatgaacagcgttctcaagataaaaaggaaagt
gttaagtttggtccggcaacagagtttttattttcacaggaagaattgaaatcgggaatt
aagcatcttgaagaaggtttgactaagacgatgcaaaaactttccgatgacaaattaaag
actgcagtgcttgagacagtaagtcatgaaattgaaatgttgaaaaatggccaaagtata
gaacagatgtttaaatatttatctattttctataaagaacctgctagtctgatagattat
ttaccagaagatggtgttgtaattttagatgaaatctctcgtattcaagaaacagcatca
catcttgaaacggaagaagcggaatggtatatatcacttcttggtgaaggaacaataatt
caggatttatctttctcccactcatttgagggatttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttacgccatatagcacatacgcatccgcaaaacattgtgaat
gtgacatgtaaaacaatgcaagatttccatgggcagatgcagttattaaaaactgaaatt
gatagatggaatgaagggcactttacgactgttgtgcttggaacagatgatgaacgtgta
aaaaaactacaacatattttaagtgattatgatattgaagcggatattgtagagggcaca
gatattttattgcctggaaggttacagattgctgtaggtgatttacatgcaggatttgaa
atgccgatgcaaaagctcgttgtcattactgaaaaggagctttttcataagaaagttaaa
aaatcacaacgtaagcaaaagttatctaatgctgagcgtattaaaagttattcggaatta
aaagttggagattatgtagttcatgtaaatcatggtataggtaaatttttaggtattgag
acattagagattaatggtgttcataaagattatttaaatattaaatatcaaggtaacgat
aagctatatgttccaattgaacaaatcgatcaagtgcaaaaatatgtgggttctgaaggt
aaggatccaaaagtttataaattaggcgggaacgattggaagaaggtcaaaacgaaggtt
gaaaaatctgtacaagacattgcagatgacctaattaaattatatgctgagcgcgaagct
tcaaaaggctatgcatatacaccagatacggcggaacaacaagaatttgaatcttccttc
ccgtatcaagagacagatgaccaattacgttctattgaagaaattaagaaagatatggaa
cgcggacgtccgatggataggcttctttgtggtgatgtaggatatggaaagaccgaagta
gctattcgtgcagcatttaaagcaatcatggatgaaaaacaagttgcgattttagtaccg
acaacaattctggcacaacaacactatgaaacaattcgagagcgttttcaagattacccg
attaatatagggttactaagtagattccgcacgcggaaacaacaaaacgaaacgcttaag
gggttaaaagatggcacagtagatattgtaatcggaacgcatcgtattttatctaaagat
gttacttataaagatttaggacttcttattattgatgaagaacaaagatttggtgtgacg
cataaagaaaaaattaaacaattaaaagcaaatgttgatgtgttaaccctaacggcaacg
ccaattccacgtacacttcacatgtctatgcttggtgtgcgtgacttatctgtcattgaa
acgccaccagaaaatcgtttcccagtccaaacgtatgtggtggaatataatccagcgtta
atgagagaagcgatagagcgagagcttgcaagaggtgggcaaatttacttcttatataac
cgggtagaggatatcgaaagaaaagcagatgaaatttcgatgctagttccagacgcccgt
gtaacatacgcacatgggaaaatgaacgaaagtgaattagagtctgttatgctatcgttt
ttagagggacagcatgatgttcttgtaagtacaacaattattgaaacaggtgtagatatc
ccgaatgttaatacgttaattgtatttgatgcagatcgtatgggactatcgcagttgtat
cagcttcgtgggcgtgttgggcgttctaatcgcgttgcatatgcatactttgcatacaaa
cgtgataaagtgctatcagaagttgcagagagacgtctacaagcaattaaagagttcaca
gagcttggatctggtttcaaaattgcgatgagagatttatcaattcgtggtgcgggtaac
ttgttaggggcagaacaacacgggtttattgattctgtcggatttgatctatattctcaa
atgttaaaagatgcaattgaacagcgcagaggaaccgatggagttgaaaatacagttaat
gttgaaattgatttagaagtagatgcgtatttaccagatgcttatatttcagatagtaaa
caaaagattatgatgtataaacaatttagaggtgtttctacaattgaggatattgaagaa
ttgcaggaagagatgatcgatagatttggtgattacccacaagaagttggttatttatta
caaattgcaaatattaaagtattggcaatgaaagaacaaatcgaattaattaagcaaaat
aaatttgaagtaacaattctgttctcagaacaagcaagccaaaatattgatggtggaaaa
ttattcatgcttggaaatagttttgggcgtatgatcggtcttggaatggaaggatcacaa
ttgaaaatcgttatgaaaacgaatggattagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcttaccagatgtaaaaaaagaagtaataaatgcctaa
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