Bacillus thuringiensis HD-789: BTF1_26290
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Entry
BTF1_26290 CDS
T02411
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btn
Bacillus thuringiensis HD-789
Pathway
btn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BTF1_26290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btn03400
]
BTF1_26290
Enzymes [BR:
btn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BTF1_26290
DNA repair and recombination proteins [BR:
btn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BTF1_26290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AFQ29420
UniProt:
A0A9W3P6E4
LinkDB
All DBs
Position
5091451..5094981
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNKEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA
PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSGI
QHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYKEPASLIDY
LPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHAFEGFLHHKKRNF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMNLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTIDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTFLFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaataaagagatacaatcagttattaatgga
ttagaagatgggttaaaggaacaacttatatcagggatggcaacgtcttctcgttcatta
ttaatggcggctttatataaaaaaacaaaaaaatcacaattaatcgtgacacataactta
taccaagcgcaaaaagtacatgaagatttagtggcgttacttggtgaaaaagatgtgtgg
ctatatccagtgaatgaacttatagcatcggaaattggggttgcaagtccagaattgaag
gcgcaacgtatagaagtgttaaatcgcttggctgctggagagaatggaatcattgtagct
ccagtggcaggattgcgtagatttttaccaataaaagaattgtggaagcaaaagcaagtt
gaaatcaatctagggcaagagattgatttagatgcgctcttgcatactttacatcatatt
ggctatgaacgtaagtcgatggtagaagctccaggggagttcagtttgcgcgggggaata
ttagatatttatcctttaactgaagaactaccatttcgtattgaattcttcgatacagaa
gtcgattctattcgattatttgatgtggatgaacagcgttctcaaggaaaaaaagaaagc
gttaagtttggtccggcaacagagtttttattttcacaggaagaattaaaatcaggaatt
cagcatcttgaagaaggtttgactaagacgatgcaaaaactttctgatgataaactaaag
actacagtacttgagacggtaagtcatgaaattgagatgttgaaaaacgggcaaagtata
gaacagatgtttaaatacttatctattttctataaagaacctgctagtctgatagattat
ttaccagaagacggtgttgtaattttagatgagatttcccgtattcaagaaacagcatca
catctggaaacagaagaggcggaatggtatatatcacttcttggtgaaggaacaattatt
caagatttatctttctctcacgcattcgagggatttcttcatcataaaaaaagaaatttt
gtatatttaacgttattcttgcgtcatattgcacacacacatccgcaaaatattgtgaat
gtaacatgtaaaacaatgcaagatttccatggacagatgaatttgttaaaaacagaaatt
gatagatggaatgaagggcattttacgactgttgtacttggaacagatgatgaacgtgtg
aaaaaattacaacatattttaagtgattatgatattgaggcagatattgtggaaggtaca
gatatcttattgcctggaaggttacaaattgctgtaggtgatttacatgcaggatttgaa
atgccgatgcaaaagcttgttgtcattactgaaaaggagctttttcataagaaagttaaa
aaatcacaacgtaaacaaaagttatcgaatgctgaacgtattaaaagttattcggaatta
aaagttggagattatgtagttcatgtaaatcatggtataggtaaatttttaggtattgag
acattagagattaatggtgttcataaagattatttaaatattaaatatcaaggtaatgat
aagttatacgttccaattgaacaaattgatcaagtccaaaaatatgtagggtctgaaggt
aaggatccaaaagtttacaaattaggtggtaatgattggaagaaggttaaaacgaaagtt
gaaaaatctgtacaagacattgcggatgacctaattaaactatatgctgaacgcgaagct
tcaaaaggctatgcatatacgccagatacagcagaacaacaagagttcgaatcatctttc
ccatatcaagagacagaggatcagttacgttctattgacgagattaaaaaagatatggaa
cgcggacgcccgatggataggctcctttgtggtgatgtagggtatggaaagactgaagtg
gctattcgtgcggcatttaaagcaattatggatgaaaaacaagttgcaattttagtaccg
acaacgattcttgcgcagcaacactatgaaacaattcgagagcgttttcaagattatcca
atcaatataggattattaagtagattccgtacgagaaaacaacaaaatgaaacgattaag
ggtttaaaggatggcacaatagatattgtaatcggaacacatcgtattttatctaaagat
gttacttataaagatttagggcttcttattattgatgaagaacaaagatttggtgtgacg
cataaagagaaaattaaacaattgaaggcgaatgttgacgtattaacattaacggcaact
ccgattccacggacgcttcatatgtctatgcttggtgtgcgcgacttatctgttattgag
acaccgccagaaaatcgtttcccagtccaaacgtatgtagtagagtataatccagcatta
atgcgagaggcgatagagcgagagcttgcaagaggcggtcaaatttacttcctatataac
cgtgtagaggatattgaaagaaaagcagatgaaatttcgatgttagttccagatgcccgt
gtaacatacgcacatgggaaaatgaacgaaagtgaattagagtctgttatgctatcattt
ttagaaggacagcatgatgttcttgtaagtacaacaattattgagacgggtgtagatatt
ccgaatgtaaatacgttaattgtatttgatgcagatcgtatgggattatcacagttgtat
cagcttcgtgggcgtgttggacgttctaatcgtgttgcatatgcatactttgcctataaa
cgtgacaaagtgctgtcagaggttgcagagaagcgtctgcaagcaattaaagagttcacg
gaacttggatctggtttcaaaattgcgatgagagatttatctattcgtggagcaggtaat
ttgttaggggcagagcagcatggatttattgattctgtcggatttgatctatattctcaa
atgttaaaagatgcaattgaacagcgtagaggaacagatggggctgaaaatacagttaat
gttgaaattgacttagaggtagatgcatacttaccagatgcttatatttcagatagtaag
caaaaaattatgatgtataaacaatttagaggtgtttctgcaattgaggatattgaagaa
ttgcaggaagaaatgatcgatagattcggtgattatccacaagaagtcggttatttatta
caaattgcaaatatcaaagtgttggcaatgaaagaacaaattgagttaattaaacagaat
aaatttgaagtaacattcctgttttctgaacaagcaagtcaaaatattgatggtggaaaa
ttattcatgcttggaaatagttttggacgtatgatcggtttaggaatggaaggatcacaa
ttgaaaattgttatgaaaacaaatggtttagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcttaccagatgtaaaaaaagaagtaataaatgcctaa
DBGET
integrated database retrieval system
