Bibersteinia trehalosi USDA-ARS-USMARC-192: WQG_11200
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Entry
WQG_11200 CDS
T02504
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bto
Bibersteinia trehalosi USDA-ARS-USMARC-192
Brite
KEGG Orthology (KO) [BR:
bto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bto03016
]
WQG_11200
Enzymes [BR:
bto01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
WQG_11200
Transfer RNA biogenesis [BR:
bto03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
WQG_11200
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
TPR_HPS5_insect
Motif
Other DBs
NCBI-ProteinID:
AGH38397
LinkDB
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Position
complement(1216962..1218092)
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AA seq
376 aa
AA seq
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MHPIPYQWIETDQQLAEICHNARMQPVVTLDTEFIRIRTYYAKLGLIQLFDGNHVALIDP
LAINDFTPFVQLLADTKVLKVLHACSEDLEVFHHYFQQMPVPMLDTQIMAGFAGLGTSVG
FAKLVQHYLNTELDKGASRTDWLARPLSEKQLQYAAADVWYLLPIYHQLATALAQTPWEN
AVQEECRSVCTKVSLPVDLDKAYKDISNAWQLNAQQLSVLHLLAKWRIEEAIKRDLALNF
IVKEQSLWRIAKEQPKHTSALLEFMHPNEVRIHGKKLLRIVEQSKHLAQEDYPDEIMRIV
DFVGYKPSLQALQRRLVEILPENLPIELLASKRQLNQLFGWQRKGENTEKLPELLIGWRR
AFGLQLLETLRKIVVN
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgcatcctataccatatcaatggattgaaacggatcaacaacttgctgaaatttgtcat
aacgcacgcatgcagccggttgtgactctagatacagaattcattcgtattcgtacttat
tatgcaaaattagggcttattcagctttttgatggaaatcatgttgcgcttattgacccg
ctagcaattaatgatttcacgccatttgttcagctacttgctgacacaaaagtcttaaaa
gtacttcatgcttgtagtgaagatcttgaggtttttcaccattattttcagcaaatgcct
gtgccaatgctagatacgcaaataatggctgggtttgcaggcctcgggacttcagtagga
tttgctaaattagtgcaacattatctaaatactgaattagataaaggtgcctctcgtacg
gattggttggctcgaccattaagcgagaaacaacttcagtatgcagctgcagatgtttgg
tatttattgcccatttatcatcaactcgcaacagcgcttgcgcaaaccccttgggaaaat
gcggttcaagaagaatgccgtagtgtttgtactaaagtgagtctgccggtagatttggat
aaagcctataaggatattagcaatgcttggcaactcaatgctcagcaactctcagtgtta
cacttattagcaaaatggcgtattgaagaagcaattaagcgagatttagctctcaatttt
attgtgaaagaacagagtttatggcgtatagccaaagagcaaccaaaacatacatcggca
ttactggaatttatgcatccaaatgaagtgcgaattcacggcaagaagctattacgcatt
gttgagcaaagtaaacatttagcacaagaagattatcctgatgaaattatgcgcattgtg
gattttgttggatataaaccgagtctccaggcgctacaacgtcgcttagtcgaaattttg
cctgagaatttaccgatagaattacttgccagcaaacgacaattgaatcaactttttggc
tggcaacggaaaggagaaaatacagaaaaattaccggaattattaattggttggcggcga
gcatttggactacaattgttagaaacattgagaaagattgttgttaattga
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