Bibersteinia trehalosi USDA-ARS-USMARC-192: WQG_12430
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Entry
WQG_12430 CDS
T02504
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
bto
Bibersteinia trehalosi USDA-ARS-USMARC-192
Pathway
bto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WQG_12430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bto03019
]
WQG_12430
Enzymes [BR:
bto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WQG_12430
Messenger RNA biogenesis [BR:
bto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WQG_12430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGH38520
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All DBs
Position
1379237..1380463
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AA seq
408 aa
AA seq
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MSKHLTEQRFSDFPIHERVLAALDSKGFEFCTPIQAKTLPHTLAGQDIAGQAQTGTGKTL
AFLVATVHHLLNNDIQTEKNQPRALILAPTRELAVQIASDASLLIKHSGFKLALAYGGDG
YDKQLQAIEKGVDILVGTTGRVIDYVKQGVINLNAIQVIVLDEADRMFDLGFIKDIRYLM
RKCPEPAQRLTMLFSATLSPRVRELAYEDMHNAEYVEIEPQQRTGHRIQEELFYPSNEDK
MALLLTLMEEEWPERCIVFANTKHKCEEVWQYLLADGHRVGILTGDIAQKKRLALLESFT
RGELDILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGKSISFACER
YAVNLPAIEAYIGHAIPVSQYDSEALFPLPKVKAKNRTRRLPINNRKR
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaccttacagaacaacgttttagcgattttcctattcatgagcgagtgctg
gctgcattagatagcaaaggctttgaattttgtactccaattcaagctaaaaccttacct
catacccttgcaggacaagatattgcaggacaggcacaaacgggtactggcaaaacactt
gcttttttagtcgcaaccgttcaccacttactcaataacgatattcaaacagaaaaaaac
cagccaagagccttaattcttgccccaactcgtgaactagcagtacaaattgcctcagat
gcatcgctgctcatcaaacactctggctttaagcttgcgcttgcctatggtggtgatggt
tatgataaacagctacaggcaattgaaaaaggtgtcgatattttggttggcacgactggg
cgtgtaattgattatgtcaaacaaggggtaataaatctaaacgcaatacaagtgattgta
ttagatgaggcagatcgaatgtttgatcttggttttatcaaagatattcgttatttaatg
cgtaaatgccctgaaccggctcaacgcttaacaatgctgttttcagcaacactttctccc
cgagtacgtgagcttgcctatgaagacatgcataacgctgaatatgttgaaattgagcct
caacaacgcacaggacaccgtattcaggaagaactcttctatccttctaacgaagataaa
atggcattattactcaccttaatggaagaagaatggcctgaacgttgcattgtgttcgcc
aacaccaaacacaaatgtgaagaagtatggcaatatttactcgcagatgggcatcgtgtt
ggcattttaactggcgatattgcacaaaagaaacgtcttgctttactcgaaagtttcacc
cgtggcgaattagatattctagtggcaaccgacgtggcggctcgtggtctgcatattcct
gatgttactcacgtgttcaattacgatctcccagatgatcgtgaagattatgttcaccgt
attggtcgcacaggacgagctggcgaaagtggcaaatccataagctttgcttgtgaacgc
tatgctgttaatttgcctgcaattgaagcctacattggacatgcaattccagttagccag
tatgatagtgaagccttattcccgttacccaaagtgaaggctaaaaacagaacacgtcgc
ttaccaatcaataaccgtaaacgctaa
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