Bibersteinia trehalosi USDA-ARS-USMARC-192: WQG_13260
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Entry
WQG_13260 CDS
T02504
Name
(GenBank) Cold-shock DEAD box protein-A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bto
Bibersteinia trehalosi USDA-ARS-USMARC-192
Pathway
bto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WQG_13260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bto03019
]
WQG_13260
03009 Ribosome biogenesis [BR:
bto03009
]
WQG_13260
Enzymes [BR:
bto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WQG_13260
Messenger RNA biogenesis [BR:
bto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WQG_13260
Ribosome biogenesis [BR:
bto03009
]
Prokaryotic type
rRNA helicases
WQG_13260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Con-6
Mn_catalase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGH38603
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All DBs
Position
complement(1471478..1473259)
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AA seq
593 aa
AA seq
DB search
MTTETMTFADLGLPQTILDAVNDMGFVNPSPIQQACIPHLLAGRDVLGMAQTGSGKTAAF
SLPILAQIQVSERHPQMLVMAPTRELAIQVADACEQFTKNMKGIRIATIYGGQSYGLQIR
DLKAGAQVVVGTPGRILDHIRKGTLNLSALKAIVLDEADEMLRMGFIEDVETVMAELPED
HQTALFSATMPEPIRRITRRFMKDPQEVKIQATQRSAPDITQSFWRVEGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTVDITELLERNGYRAAALNGDMTQQAREHALERLRSGRLDIVV
ATDVAARGIDIERISLVVNYDITLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKNI
EHLIKKPIDEVSIPNHEMLMAKRREKFKARISQQLEHHDLEQYRELLEDLFTADQDHEEL
AAAMMMMLTEKQKLILPPDPEIKRSRERGGRENPRSLERRGGREHRENNGVAMDLYRIEL
GREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPKHLVQHFANKARLLS
KPMQMSLIGAVENGGGERRGNPRKGSRNDRQERGFKERKGGFKEKRFNERGRR
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgaaactatgactttcgccgacttaggcttaccccaaaccattcttgatgct
gtaaatgacatgggctttgttaatccatctcccattcaacaagcctgtattccacactta
cttgcaggtcgtgatgtattaggtatggcacaaacaggcagtggtaaaaccgccgcattc
tctttaccgattcttgcacagattcaagtctctgaacgccacccacaaatgttagtgatg
gctccaacccgtgaattagcgattcaagttgctgatgcttgtgagcaatttaccaaaaat
atgaaaggcattcgtattgcaactatttatggtgggcaatcttacggcttacagattcgt
gatttaaaagcaggcgcacaagtggtggtcgggacaccgggacgtatcttggaccatatc
cgtaaaggtacgctaaacctttctgcattaaaagcgattgtgctcgatgaggcagacgaa
atgttgcgtatgggctttattgaagatgtggaaaccgtgatggcagaattaccagaagat
caccaaacagctctcttctctgccacaatgcctgagcctattcgccgtattacacgccgt
tttatgaaagatccgcaagaagttaaaattcaggcaactcaacgttcagcacctgacatc
acccaaagtttttggcgtgtagaaggtttccgtaaaaatgatgccttattgcgtttctta
gaagttgaagaatttgacgctgcaattatctttactcgtaccaaaacaggcacggtagat
attaccgaattgttagaacgcaatggctaccgtgcggcagcattgaatggtgatatgacc
cagcaagctcgtgagcacgccttagaacgtttaagatcaggccgattagatattgtcgtg
gcaaccgatgtcgccgctcgtggtattgatattgagagaatcagtttagtggtaaactac
gacattactcttgatgcagaaagctatgtacaccgtattgggcgtacagggcgtgcaggt
cgctctggtcgtgccttattatttgttgaacctcgtgaacgccgtttgctgaaaaacatt
gaacatctcatcaaaaaaccgattgatgaagtctccattccaaaccacgaaatgttgatg
gcaaaacgtcgtgagaaatttaaagcccgtatttctcagcaattagagcatcacgattta
gagcaatatcgtgaattattggaagatttattcacagctgaccaagatcacgaagagtta
gctgccgcaatgatgatgatgctaaccgaaaaacaaaaattgattttaccacctgatcct
gaaatcaaacgcagtcgtgaacgtggtgggcgtgaaaatcctcgttcattagaacgtcgt
ggcggtcgtgaacatcgtgaaaacaatggcgtagcgatggatttataccgcattgaatta
gggcgtgaagatggcgtagaagttcgccacattgtcggtgcaattgccaacgaaggcgac
atcagtagtcgttacattgggcatatcaaactgcacgacacctattcaaccattgaattg
ccgcaaggtatgccaaaacatttagtccaacactttgctaataaagctcgtttattaagc
aaaccaatgcaaatgagcttaatcggtgcagtagaaaatggcggcggcgaacgtcgtggt
aatcctcgcaaaggcagtcgcaatgatcgtcaagagcgaggctttaaagaacgtaaaggc
ggttttaaagagaagcgttttaacgaacgtggtcgccgttaa
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