Bibersteinia trehalosi USDA-ARS-USMARC-192: WQG_20860
Help
Entry
WQG_20860 CDS
T02504
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bto
Bibersteinia trehalosi USDA-ARS-USMARC-192
Pathway
bto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WQG_20860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bto03400
]
WQG_20860
Enzymes [BR:
bto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WQG_20860
DNA repair and recombination proteins [BR:
bto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WQG_20860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGH39363
LinkDB
All DBs
Position
complement(2233331..2236864)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSSIIQFNLPQLGGKFQDHQTLGNLIGHADVLTISQAAREFNGLTIVVTPDTRTALRLEK
ALPQFAQLPIQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGQKQIILLPVATLLQKV
CPPNYLSNNVFLIKKGDRFSIQKLRLQLENAGYRAVEQVLEYGEYAVRGSILDLYPMGAE
EPFRLDFFDDEIDSIRTFDVDSQRTLAEISEINLLPAHEFPTDSNGIEHFRAKFRETFGE
IRREPEHIYQQVSKGILNAGIEYWQPLFFDEMASLFDYLPENSLFITYEGIKEKAEQFQQ
DTHNRYESRRVDPMRPLLPPSELWFAIDDVQRWLKAYPRLTLTSEKIRKSSAKMNANVAN
LPEIAIQSGTKEPFAQLQQFRQKFKGSILFSVESEGRRETLLDLLAPLGIKPKQIKSIDE
AQDLPFSLIISPLDQGFIVETGGYKTRPYDDELNTNVENKQGNVGAGFIPARNLAIICET
DLLGEKVQTRREKNRKTVNPDTLIRNLAELKIGQAVVHLENGVGRYGGLTVLDAGGMKAE
YLVLHYANDAKLYVPVASLHLISRYIGGADETAPLHKLGSEAWAKTRQKAAEKIRDVAAE
LLDVYAKRESQTGFAFAYDKAEFDQFSATFPYEETDDQKIAINAVISDMCQAKAMDRLVC
GDVGFGKTEVAIRATFLAVMNHKQVAILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFK
TAKEQKTILQNVAEGKVDILVGTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRA
NVDILTLTATPIPRTLNMALNGMRDLSIIASPPARRLSIKTFVRQSDEMVIREAILREIL
RGGQVYYLHNDVATIENCAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVC
STIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAQ
QRLEAMSSIDNLGAGFALATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQ
EGREPSLDEITQNQAEIELRVPALIPDDYLPDVNMRLSFYKRIASSENETQLKDLKIELI
DRFGLLPEATKNLFQITQLRFIAQKLGLKKVEAGINGGFLEFKPTATPDPMKFITLIQKQ
PAVYSFEGAVKFKFRLPLEENNKRLEFVENLLREINA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgatcattcaattcaacctaccgcaactaggcggtaaattccaagatcatcaa
acacttggaaacctcatcgggcatgctgatgttcttactatcagccaagctgcccgagag
tttaacggcttaaccatcgtggttacccccgatactcgcacggcattgcgattagaaaaa
gccctaccgcaatttgctcagcttcctatacagcttttccccgattgggaaaccttgcct
tatgataatttttcgcctcatcaagatattatctctgcacggctttctgctctgtttcaa
ctgcaacaaggtcagaagcaaattatcttgcttcctgtggcaaccctattacaaaaagtt
tgtccgcccaattatctgagcaataacgtttttttaatcaaaaaaggcgaccgtttttcc
attcaaaaactgcgtttacaactagaaaacgctggctatcgtgcggtagaacaggtgttg
gaatacggtgaatatgcggtgcgtggctcaattttggatttatacccaatgggggcagaa
gagccattccgcttagatttttttgatgatgagattgattctatccgcacttttgatgtg
gatagccaacgcacccttgccgaaatcagtgaaatcaacctattaccggctcacgagttc
ccgacagatagcaacgggatcgagcattttagagcgaaattccgtgaaacctttggtgaa
atccgccgagaacccgagcatatttatcagcaagtgagcaaaggtattctgaatgcaggg
attgaatactggcaaccgctgttttttgatgaaatggcaagtctgtttgattatctgcct
gaaaatagtctctttattacttatgagggtatcaaagagaaagccgagcaatttcaacaa
gatactcacaatcgctatgagagccgccgtgttgatccaatgcgtccgctactcccaccg
agtgagctttggtttgcaattgatgatgtacaacgttggcttaaagcctacccacgttta
acactcaccagcgagaaaattcgcaaatcctcagcgaaaatgaatgcaaacgtcgcaaat
ttacccgagattgccattcaatcaggcacaaaagaaccttttgcccaattgcaacaattc
cgccaaaaatttaagggaagtattctcttttcggtagaaagcgaagggagacgtgaaacg
cttttggatttgcttgcacctttggggattaagccaaagcagattaaatccatagatgaa
gcacaagatttgccattttctttgataatttcaccgcttgatcaaggatttattgtggaa
acgggcgggtataaaacccgcccctacgatgatgaattaaacacgaatgttgaaaataaa
caaggaaatgtaggggcgggttttatacccgcccgcaaccttgccatcatttgcgaaacc
gatctcttaggtgaaaaggtgcaaacacggcgagagaaaaaccgcaaaaccgtcaatcct
gataccctaattcgcaaccttgccgagctgaaaatcgggcaagcagtggtacatttggaa
aacggcgtggggcgttacggcggtttaaccgtgctggacgcaggcggaatgaaagcggaa
tacttggtgctacattacgccaacgatgcaaaactctatgtgccagtggcgtccttgcat
ttaatcagccgttatatcggcggagcggacgaaaccgcaccgctgcacaaattaggtagt
gaagcgtgggcgaaaacccgccagaaagcagcggaaaaaatccgtgatgtggcggcggag
ttgcttgatgtttatgccaaacgagagagccaaaccggttttgcttttgcctacgacaaa
gcggaatttgaccaatttagtgctacttttccttatgaagaaacggacgatcagaaaatc
gccatcaatgccgtaattagcgatatgtgccaagcgaaagcgatggatagattggtgtgt
ggcgatgttggtttcggtaaaaccgaagtcgccattcgagcgactttcttggcggtgatg
aaccataaacaggttgccattcttgccccaactacgctacttgcccaacagcattacgag
aatttcaaagaccgctttgcgaactatcctgtgaatgtggaagtgctgtctcgctttaaa
accgccaaagagcagaaaacgattttgcaaaatgtggcggaaggcaaagtggatattttg
gtcggcacgcacaaactgttacaagacgatgtagcgttccgtgatcttgggcttttagtg
attgacgaagaacaccgtttcggcgtacgtcaaaaagagaagatcaaacaactgcgtgcc
aatgtggatattctgaccctcaccgctacgccaattccaagaacgctgaatatggcactc
aacggaatgcgggatctctcgattatcgccagcccaccagctcgccgactttcaatcaaa
acctttgtgcgacaaagtgatgaaatggtaatccgtgaggcaattttgcgtgaaattctg
cgtggtgggcaggtttattacctgcacaatgatgtggcgaccattgaaaactgtgcggaa
aaattggcggaacttgtgccagaagctcgcattgtgattggacacggacaaatgcgtgaa
cgtgaattggaacgagtgatgagcgatttttatcatcagcgttttaatttactggtttgc
tctactattattgaaacaggaattgacgtgccaactgccaataccattatcattgaacga
gcagataaatttgggctggcacagctgcaccaactgcgtggacgggtggggcgttcgcac
caccaagcctacgcctatatgctcacaccacacccgaaaacgctgaccaaagacgcccaa
caacggttggaagcgatgagtagtattgataatctcggggctggttttgcgttggcgacc
cacgatttagaaattcgtggtgcaggggaattactcggttctgagcagagcggacaaatt
gaatctatcggtttttcgctttatatggatttactagaaaatgcggtcaaagccttgcaa
gaagggcgagagccaagccttgatgaaatcacccaaaatcaagcggagatagaactgcgt
gtccctgcgttaatccctgatgattacctgcctgatgtcaatatgcgtttatccttctat
aaacgtatcgcaagcagtgaaaatgaaacccaactaaaagatctcaaaattgagctgatt
gaccgttttggcttattaccagaggctaccaaaaacttattccaaatcactcaattgcga
tttattgcccaaaagcttggcttgaaaaaagtggaggctggcattaatggcggtttctta
gaatttaaaccaacggcaacacctgacccgatgaaattcatcaccttaattcaaaaacaa
cctgcggtatatagctttgaaggggcggtaaaattcaagtttagattgccactcgaagaa
aataacaagcggttagaatttgtagaaaatttactcagagaaattaatgcatag
DBGET
integrated database retrieval system
