Bifidobacterium thermophilum: D805_1511
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Entry
D805_1511 CDS
T02505
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
btp
Bifidobacterium thermophilum
Pathway
btp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D805_1511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btp03019
]
D805_1511
03016 Transfer RNA biogenesis [BR:
btp03016
]
D805_1511
Enzymes [BR:
btp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
D805_1511
Messenger RNA biogenesis [BR:
btp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D805_1511
Transfer RNA biogenesis [BR:
btp03016
]
Prokaryotic type
tRNA degradation factors
D805_1511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
RNase_PH_C
KH_2
Mug135_C
PCB_OB
S1_RRP5
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
AGH41778
UniProt:
M4RGT3
LinkDB
All DBs
Position
complement(1847638..1850358)
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AA seq
906 aa
AA seq
DB search
MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMVLSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLAVNPDDAYDVLALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKA
ICEAQNELKAKAPKPAKEFQLFPEYTEDLYNRIDEIAHSQLDEALSIAEKLPRQERIHEI
KEQVREQLANEFTDMDDAEKEKELGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLGMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLSAGVPLKAPVAGIAMGLVSGDVDGQHIYKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADVLAAALQQAKEARATILDLINECIDGPAEMSPFAPRIITTKVPVDKIG
EVIGPKGKMINQIQEDTGAEITIEDDGTVYISSEGGEAAEKAKGIIDSIANPHVPEPGEV
YNGKVVKTTSFGAFVNLTPGTDGLLHISQVRNLANGERIDAVEDVLKEGDTVEVVVQGVD
DRGKISLAIPGFEDQESSAPRSAGRGRDERRGGGRGRRDEGEDRGYRGGRRSRDDRDERD
DEYDDRPRRGRRSDRDDRDDRYDDDRRPSRRSRDDRYDDERPSRRSRDDRDERDDEYDDR
PRRGRRSERSERDDRGGRGYRGGRRDDRNPRYAADDHYDEYRADREERHERPRRRVRRDF
DPFEEN
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
ttggagggtcccgaaatcaaggccgtagaggccgtaatcgacaatggttcatttggcaag
cgcacgttgcgttttgagacgggtcgtctcgcccagcaggcggatggggctgtggccgcc
tatcttgatgatgattcgatggtcctgtccaccaccacggccggctccagcccgaaggag
aactacgacttcttcccgctgaccgttgacgtggaagagaagatgtacgccgcgggcaag
atcccgggctccttcttccgccgtgagggccgcccgagctccgaggcgattctcgcttgc
cgtatcatcgaccgcccgctgcgcccgctgttcccgcacacgctgcgcaacgaagtgcag
gtcgtggagaccgtgctcgccgtcaaccctgacgacgcctacgatgtgcttgccctgaac
gccgcatccgcgtccaccatgatttccggcctgccattcgaaggtccggtttccggcgtg
cgtctcgccctgattgacggccagtgggtcgccttcccgcgctggagcgagcgtgagcgc
gcggtcttcgagatcgtcgtcgcaggccgtgtggtcgagaacggtgatgtcgcaatcgcc
atgatcgaggccggtgccggcaagaatgcctggcacctcatctatgacgagggccagacc
aagccggacgaggaagtcgtcgccggtggtcttgaagccgccaagccgttcatcaaggcg
atttgcgaggcccagaacgagctcaaggccaaggctccgaagccagccaaggagttccag
ctgttcccggagtacaccgaggacctctacaaccgcatcgacgagatcgcccactcccag
ctcgacgaagccctgtccatcgcggaaaagctgcctcgtcaggagcgcatccacgaaatc
aaggaacaggtgcgcgagcagctggccaacgagttcaccgacatggacgacgccgagaag
gaaaaggaactcggcaacgcgttcaaggagctgcagcgccagattgtgcgccgccgcatc
ctgacccaggactaccgcatcgacggccgcggcctgcgcgacatccgcaccctgtccgcc
gaagtggacatcgtgccgcgcgtgcacggctccgccctcttccagcgcggcgaaacccag
atcctgggtgtcaccacgctcggcatgctcaagatggaacagcagatcgacgcgctgagc
ggcccgcagtccaagcggtacatgcacaactacgagatgccgccgtattcgaccggcgaa
accggccgtgtcggctccccgaagcgccgcgaaatcggccatggcgccctcgcagagaag
gctcttgtgccggtgctgccgagccgtgaggagttcccgtacgccatccgtcaggtctcc
gaggccatcggttccaacggttccacttccatgggctccgtgtgcgcctccactctgtcg
ctgctgtccgccggcgtgccgctgaaggccccggttgcaggcatcgcgatgggcctggtc
tctggtgacgttgacggccagcacatctacaagacgctgaccgacatcctgggcgctgag
gacgcgttcggcgatatggacttcaaggtggctggcacttctgagttcatcaccgcgttg
cagctggacaccaagctcgacggcattccggcagacgtactcgccgccgccctgcagcag
gcgaaggaagcccgcgccacgattctcgacttgatcaacgagtgcatcgacggcccggcc
gagatgagcccgttcgctccgcgtatcatcaccaccaaggtgcctgtcgacaagatcggc
gaggtcatcggcccgaagggcaagatgattaatcagatccaggaggacaccggcgccgag
atcaccatcgaggacgacggcaccgtctacatctcctccgagggtggcgaggctgccgag
aaggcgaagggcatcatcgattccatcgccaacccgcatgtccctgaaccgggcgaggtc
tacaacggcaaggtcgttaagaccaccagcttcggcgcattcgtgaacctgaccccgggc
accgacggcctgctgcacatctcccaggtgcgtaacctcgccaacggcgagcgtatcgac
gccgttgaggacgtgctcaaggaaggcgacaccgtcgaggtcgtcgtgcagggtgttgat
gaccgcggcaagatctccctggccatccccggtttcgaggaccaggagtcttcggctcca
cgttccgccggtcgcgggcgtgacgagcgtcgtggcggcggccgtggccgtcgtgatgag
ggcgaggatcgcggatatcgcggtggccgtcgttcccgcgatgaccgtgacgagcgtgat
gatgagtatgatgatcgtccgcgtcgtggccgtcgttccgaccgtgatgaccgtgacgac
cgttacgatgacgaccgccgtccgtctcgccgcagccgtgacgaccgttatgatgatgag
cgtccgtcccgtcgttcccgcgatgaccgtgacgagcgtgatgatgagtatgatgatcgt
ccgcgtcgtggccgtcgttccgagcgttcggagcgtgacgaccgtggtggccgtggctat
cgtggcggtcgtcgtgacgatcgcaacccgcgctatgcggcggatgaccactacgacgag
tatcgcgccgaccgcgaggagcgtcatgagcgtccgcgtcgccgtgtgcgccgcgatttc
gatccgttcgaggagaactga
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