Bartonella tribocorum CIP 105476: BT_0896
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Entry
BT_0896 CDS
T00636
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
btr
Bartonella tribocorum CIP 105476
Pathway
btr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
btr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BT_0896 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
btr03021
]
BT_0896 (rpoC)
03400 DNA repair and recombination proteins [BR:
btr03400
]
BT_0896 (rpoC)
Enzymes [BR:
btr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BT_0896 (rpoC)
Transcription machinery [BR:
btr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BT_0896 (rpoC)
DNA repair and recombination proteins [BR:
btr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BT_0896 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
CAK01299
UniProt:
A9ISG4
LinkDB
All DBs
Position
958961..963172
Genome browser
AA seq
1403 aa
AA seq
DB search
MNHEVMNLFNPQAPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPGRISTLLDLTLKDIERVLYFENYIVTEPGLTSLKLHQLLSEEEYMLAIDEFGEDQFTA
MIGAEAIYELLAGMELDKIANDLRLELAETTSELKQKKLIKRLKIVENFLESGNKPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSEKEPGEGMAFSDIGELHYALE
NKVVTLHTKIKGRVKNMGKDGKEVAKLYDTTPGRLIIGELLPRNPNISFDIVNQEMTKKN
ISKMIDYVYRHCGQKETVIFCDRIMQLGFSYACRAGISFGKDDMVIPDSKSRLVAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVDFDPKTGRQRPMNSIY
MMSHSGARGSANQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTAKGLTMQPIVDAGQIVASLGQRILGRT
ALVDILHPVSGEVILEGGAMIEEADVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSYLEASYEGTVEIRNRN
VARNSEGHLVVMGRNMAILIKDELGKERVVHRISYGAHIFVDDGDVVKRGQRIAEWDPYT
RPILTEVEGYVGFEDMVDGLSVTETADESTGITKRLVIDWRANPRGAELKPAIIIHADKE
GKSIAKLYKGGEARYMMSVETILSVELGAHVKAGDVIARLPMESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEVSGTIRFGRGYKNKRRIIIEPNDETLEPVEYLIPKGKLFHFQEGDQ
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQK
VEITESGDSGYIPGDNVDRIELDEINDNLIAEGKKPASGNPILLGITKASLQTPSFISAA
SFQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTISQIRRIAAVRDDLIVDEQ
RKSSNNEVAKAMLTNMTAESVSK
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacgaggtcatgaatcttttcaatcctcaagcgccagcgcaaacatttgactct
attcgtatttccattgcgagtcctgagaagattttatcttggtcgtatggtgagattaag
aagcctgagactattaattatcgaacttttaaaccagagcgggatggtcttttttgtgcg
cgtatatttggccctattaaggactatgaatgtctatgcggcaaatataaacgcatgaaa
tataagggcattatttgtgaaaaatgtggtgtggaagttactctttcgcgcgtacgtcgt
gagcgtatggggcatattgagcttgccgcacctgttgcacacatatggtttcttaaatcg
ttgccaggtcgtatttctacacttttagatttaactttaaaagatatcgagcgggttctt
tattttgagaattatattgtaaccgagccagggttgacatctcttaaactccaccagctt
ctttctgaagaagaatatatgcttgctattgatgagtttggagaagatcaatttacagct
atgattggtgctgaggctatttatgagcttttagcggggatggagttggataaaattgcc
aatgatttgcgtctcgaattagcggaaacaacttcagagttaaaacagaaaaaattaatt
aaacggcttaagatcgttgaaaattttcttgaatctgggaataaaccagagtggatgatt
atgaaaacaattccggttattccaccggatttgcgtccattggttccacttgatggtgga
cgttttgcgacatcagatctaaatgatctttatcgacgtgttatcaatcgtaataaccgc
ttgaaacggctgattgaattgcgtgctcctgggattatcgtgcgtaatgaaaagcgtatg
gtgcaagaagctgttgacgcattgtttgataacggacggcgtgggcgtgtgattacggga
gccaataaacgtccgttaaaatctctttcagatatgttaaaggggaagcaaggccgtttt
cgtcaaaacctgcttggaaagcgtgttgattattcggggcgctctgttatcgtgacaggt
cctgaattaaaattacatcaatgtggtcttcccaaaaaaatggcccttgaattatttaag
ccttttatttatgcacggcttgatgcgaaagggtattcctcaactgtaaaacaagcaaaa
aagcttgttgagaaagagcatccagaagtttgggatatcttagatgaggttattcgtgaa
catcctgttttactcaatcgtgcgccaacattgcaccgtttggggattcaggcttttgaa
cctatcttaattgaaggaaaggctatccaacttcatccattggtatgtaccgcttttaat
gcggattttgatggagatcagatggctgttcacgttccactttctcttgaagcacagctt
gaagcccgtgttttgatgatgtcgaccaataatattcttcatccagctaatggtgccccc
attattgttccatcacaggatatggttcttggactttattatctctcgattgtttctgaa
aaagaacccggtgagggaatggctttttctgatataggtgagcttcattatgccttagaa
aataaggtcgtaacgcttcatacgaagattaagggccgtgttaagaatatgggcaaggat
ggaaaagaagttgctaaactttatgatacaacacctggtcgtttgattatcggtgagctt
ttgcccagaaatccgaatatctcatttgatattgtcaatcaagaaatgacaaaaaagaat
atttctaaaatgattgattatgtttatcgccactgtggacaaaaggagacggttattttt
tgtgaccgtattatgcagcttggtttttcttatgcttgtcgtgcaggaatttcattcggt
aaggatgatatggttatccctgatagcaagtcacgtttggttgcagaaacagaagctttg
gctaaagaatacgaacagcaatacaatgatggtttgattacacaaggtgaaaaatacaat
aaggttgtagacgcttggggtaaatgtacagaccgtgttgcggatgaaatgatgaaacga
attcaagccgtcgattttgatcctaaaaccggtcgtcaacggcctatgaattcgatttat
atgatgtcgcactctggtgctcgtggctctgctaaccagatgagacaattggctggtatg
cgtggattaatggcaaaaccatcgggtgaaattattgaaacacctattatttccaatttt
aaggaaggtctaactgttaacgaatactttaactctacacatggtgcgcgtaaagggctt
gctgatactgcgttaaaaacggcgaactctggttatctcacacggcgtcttgttgatgtt
gcacaggatgctattatttcagccgttgattgtggtacggcaaaagggcttaccatgcag
ccaattgttgatgcaggacaaattgttgcctcccttgggcaaagaattcttggtcgtaca
gcccttgttgatattttacatcctgtctctggagaggttattcttgaaggtggagcgatg
attgaggaggctgatgtcgcaaagattgaagaagccggaattcaatctgttcaaattcgt
tctgctttaacctgtgaaacacgtcttggtgtttgtgcaaaatgctatggtcgtgatttg
gcgcgtggtacaccggttaatcagggagaagcggttggtgttattgctgctcagtcaatt
ggtgagccgggaacacagctaactatgcgtactttccacttaggaggaactgcgcaggtt
gttgattcatcgtatttagaagcctcttatgaaggtacggtagagattcgtaatcgtaat
gtggcgcgtaactctgaaggccatttggttgttatggggcgtaatatggctattcttatc
aaggatgagttaggaaaagagcgcgttgtgcatcgtattagctatggagcacatattttt
gttgatgatggtgatgtggttaaacgtggccaacgtatagcggaatgggatccttataca
cgtccaattttgacggaagttgaaggctatgtgggttttgaagatatggttgatggttta
tcggtcactgaaacagctgatgaatcgacggggattacaaagcgtttggtgattgattgg
cgcgctaatccacgtggtgcagagctcaaaccagctattattatccacgcggataaagaa
ggtaaatccattgctaaattgtataaaggaggtgaagcccgttatatgatgtcggtggaa
actattctttctgtcgaacttggtgctcatgttaaagcgggtgatgttattgctcgtttg
ccaatggaaagtgccaagacgaaagatattacgggcggtctaccacgggtggcagagctt
tttgaagcgcgtcgtccaaaagatcatgcgattattgctgaagtcagtggtacaattcga
tttggccgcggttataagaataaacgccgtattattattgaaccaaatgatgaaactctt
gagccagtagaatatttgattccaaaaggtaagttgtttcacttccaagaaggcgatcaa
attgaaaagggtgattatatccttgatggtaatccagcccctcatgatattttggcgatt
aagggtgttgaagctttggcatcttaccttgttaatgaaattcaggaggtttatcgtttg
cagggtgttcttatcaatgacaagcacattgaagtgattgttcgccaaatgttgcaaaaa
gttgaaattactgaatcaggagattctggttatattccaggtgataatgttgatcgtatt
gaacttgatgaaatcaatgataatttaattgcagaagggaagaaacccgcatctggtaat
cccattcttcttggaattacaaaagcttctcttcaaacgccttctttcatttctgcggca
tcgtttcaggaaacaacgcgtgttctgaccgaagcagcggtttctggtaaaattgatact
ttgcaaggacttaaagaaaacgttattgttggccgtcttattcctgctggtacagggggc
acgatttctcaaatccgtcgtattgcagcagttcgtgatgatttgattgtagatgagcaa
cgtaagtctagtaataacgaagtggccaaagctatgttgacaaatatgacagctgaatcc
gtttctaaataa
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