Bibersteinia trehalosi USDA-ARS-USMARC-190: F544_12810
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Entry
F544_12810 CDS
T03019
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
btra
Bibersteinia trehalosi USDA-ARS-USMARC-190
Pathway
btra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F544_12810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btra03019
]
F544_12810
Enzymes [BR:
btra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F544_12810
Messenger RNA biogenesis [BR:
btra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F544_12810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHG86509
UniProt:
W0R5T7
LinkDB
All DBs
Position
1405084..1406310
Genome browser
AA seq
408 aa
AA seq
DB search
MSKHLTEQRFSDFPIHERVLAALDSKGFEFCTPIQAKTLPHTLAGQDIAGQAQTSTGKTL
AFLVATVHHLLNNDIQTEKNQPRALILAPTRELAVQIASDASLLIKHSGFKLALAYGGDG
YDKQLQAIEKGVDILVGTTGRVIDYVKQGVINLNAIQVIVLDEADRMFDLGFIKDIRYLM
RKCPEPAQRLTMLFSATLSPRVRELAYEDMHNAEYVEIEPQQRTGHRIQEELFYPSNEDK
MALLLTLMEEEWPERCIVFANTKHKCEEVWQYLLADGHRVGILTGDIAQKKRLALLESFT
RGELDILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGKSISFACER
YAVNLPAIEAYIGHAIPVSQYDSEALFPLPKVKAKNRTRRLPINNRKR
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaccttacagaacaacgttttagcgattttcctattcatgagcgagtgctg
gctgcattagatagcaaaggctttgaattttgtactccaattcaagctaaaaccttacct
catacccttgcaggacaagatattgcaggacaggcacaaacgagtactggcaaaacactt
gcttttttagtcgcaaccgttcaccacttactcaataacgatattcaaacagaaaaaaac
cagccaagagccttaattcttgccccaactcgtgaactagcagtacaaattgcctcagat
gcatcgctgctcatcaaacactctggctttaagcttgcgcttgcctatggtggtgatggt
tatgataaacagctacaggcaattgaaaaaggtgtcgatattttggttggcacgactggg
cgtgtaattgattatgtcaaacaaggggtaataaatctaaacgcaatacaagtgattgta
ttagatgaggcagatcgaatgtttgatcttggttttatcaaagatattcgttatttaatg
cgtaaatgccctgaacctgctcaacgcttaacaatgctgttttcagcaacactttctccc
cgagtacgtgagcttgcctatgaagacatgcataacgctgaatatgttgaaattgagcct
caacaacgcacaggacaccgtattcaggaagaactcttctatccttctaacgaagataaa
atggcattattactcaccttaatggaagaagaatggcctgaacgttgcattgtgttcgcc
aacaccaaacacaaatgtgaagaagtatggcaatatttactcgcagatgggcatcgtgtt
ggcattttaactggcgatattgcacaaaagaaacgtcttgctttactcgaaagtttcacc
cgtggcgaattagatattctagtggcaaccgacgtggcggctcgtggtctgcatattcct
gatgttactcacgtgttcaattacgatctcccagatgatcgtgaagattatgttcaccgt
attggtcgcacaggacgagctggcgaaagtggcaaatccataagctttgcttgtgaacgc
tatgctgttaatttgcctgcaattgaagcctacattggacatgcaattccagttagccag
tatgatagtgaagccttattcccgttacccaaagtgaaggctaaaaacagaacacgtcgc
ttaccaatcaataaccgtaaacgctaa
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