Bibersteinia trehalosi USDA-ARS-USMARC-190: F544_21430
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Entry
F544_21430 CDS
T03019
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btra
Bibersteinia trehalosi USDA-ARS-USMARC-190
Pathway
btra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F544_21430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btra03400
]
F544_21430
Enzymes [BR:
btra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F544_21430
DNA repair and recombination proteins [BR:
btra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F544_21430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHG87371
UniProt:
W0R9A5
LinkDB
All DBs
Position
complement(2272596..2276078)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSSLIQFNLPQLGGKFQDHQTLGNLIGHADVLAISQAAREFNGLTIVVTPDTRTALRLEK
SLPQFAQLPIQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGQKQIILLPVATLLQKV
CPPNYLSNNVFLIKKGDRFSIQKLRLQLENAGYRAVEQVLEYGEYAVRGSILDLYPMGAE
APFRLDFFDDEIDSIRTFDVDSQRTLAEISEINLLPAHEFPTDSSGIEHFRAKFRETFGE
IRREPEHIYQQVSKGVLNAGIEYWQPLFFDEMASLFDYLPENSLFITYEGIKEKAEQFQQ
DTHHRYESRRVDPMRPLLPPSELWFAIDDVQRWLKAYPRLTLTSEKIRKSAAKMNANVAN
LPEIAIQSGTKEPFAPLQQFRQKFKGGILFSVESEGRRETLLDLLAPLGVKPKQVGSIDE
MMVQASTLVPNDNLQTFLIISPLDQGFVIENTSGQNLAIICETDLLGEKVQTRREKNRKT
VNPDTLIRNLAELKIGQAVVHLENGVGRYGGLTVLDAGGMKAEYLVLHYANDAKLYVPVA
SLHLISRYIGGADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFA
YDKAEFDQFSATFPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFL
AVMNHKQVAILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKV
DILVGTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLN
MALNGMRDLSIIASPPARRLSIKTFVRQSDEMVIREAILREILRGGQVYYLHNDVATIEN
CAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTII
IERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAQQRLEAMSSIDNLGAGFA
LATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPSLDEITQNQAEI
ELRVPALIPDDYLPDVNMRLSFYKRIASSENETQLKDLKIELIDRFGLLPEATKNLFQIT
QLRFIAQKLGLKKVEAGINGGFLEFKPTATPDPMKFITLIQKQPAVYSFEGAVKFKFRLP
LEENNKRLEFVENLLREINA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgctcattcaattcaacctgccgcaactaggcggtaaatttcaagatcatcaa
acccttggaaacctcatcgggcatgctgatgttcttgctatcagccaagccgcccgagag
tttaatggcttaactatcgttgttacccctgatactcgtacggcattgcgattagaaaaa
tccctaccgcaatttgctcagcttcctatacagcttttccccgattgggaaaccttgcct
tatgataatttttcgcctcatcaagatattatctctgcacggctttctgccctgtttcaa
ttgcaacaaggtcagaagcaaattatcttgctccctgtggcaaccctattacaaaaagtc
tgtccgcccaattatctgagcaataacgtttttttaattaaaaaaggcgaccgtttttcc
attcaaaaactgcgtttacaactagaaaatgctggctatcgggcggtagagcaggtgctg
gaatacggtgaatacgcagtacgtggctcaattttggatttatacccaatgggggcagaa
gccccattccgcttagatttttttgatgatgagattgattctatccgcacttttgatgtg
gatagccaacgcacccttgctgaaatcagtgaaatcaatctattaccggctcacgagttc
ccgactgatagcagtggtatcgagcattttagagcgaaattccgtgaaacctttggtgaa
attcgtcgagaacccgagcatatttatcagcaggttagcaaaggcgtgttaaatgcaggg
attgaatactggcaaccgctcttttttgatgaaatggcaagcctgtttgattatctgcct
gaaaatagtctctttattacttatgagggtatcaaagagaaagccgagcaatttcaacaa
gatacccatcatcgctatgagagcagacgagttgatccaatgcgtccgctactcccaccg
agtgagctttggtttgccattgatgatgtacaacgttggcttaaagcctacccacgttta
acactcaccagcgagaaaattcgcaaatccgcagcgaaaatgaatgcaaacgtcgcaaat
ttacccgaaattgccattcaatcaggtacaaaagaaccgtttgccccattgcaacaattc
cgccaaaaatttaaaggcggtattctcttttcggtagaaagcgaagggagacgtgaaacg
cttttggatctgcttgctccgcttggggtgaagccgaagcaggtcggatctattgatgaa
atgatggtgcaagcgtccacgcttgtaccaaacgacaatttgcaaactttcctcattatt
tcaccgcttgatcagggttttgttattgaaaatacaagcggtcaaaatttagcaataatt
tgcgaaaccgatctcttaggcgaaaaggtgcaaacacggcgtgagaaaaaccgcaaaacc
gtcaatccagataccttaatccgtaaccttgccgaactgaaaatcggacaggcggtggtg
catttggaaaacggtgtggggcgttacggtggcttaaccgtgctagacgctggcggaatg
aaagccgaatatcttgtgctacattacgccaacgatgccaaactctatgtgccagtggcg
tccttgcatttaatcagccgttatatcggcggagcagacgaaaccgcaccactgcacaaa
ttaggcagtgaagcgtgggcgaaaactcgccaaaaagccgcagaaaaaatccgtgatgtg
gcggcagaattgctcgatgtttatgccaaacgagaaagccaaaccggttttgcttttgcc
tacgacaaagcggaatttgaccagtttagtgccactttcccttacgaggaaacggacgat
cagaaaattgccatcaatgccgtaattagcgatatgtgccaagccaaagcgatggataga
ttagtgtgcggcgatgtcggcttcggcaaaaccgaagtggcaattcgagcgactttcttg
gcggtgatgaaccataaacaggtagccattcttgccccaaccaccttgcttgcccaacag
cattatgagaatttcaaagatcgttttgccaactatcctgtgaatgtggaagtgctgtct
cgctttaaaaccgccaaagagcagaaaacgattttgcaaaatgtggcggagggcaaagtg
gatattttggtcggcacgcacaagctgttgcaagacgatgtggcgttccgtgatcttggg
cttttagtgattgacgaagaacaccgtttcggtgtacgccaaaaagagaagatcaaacaa
ctgcgtgccaatgtggatattctgaccctcaccgccacgccaattccaagaacgctgaat
atggcactcaacggaatgcgggatctctcgattatcgccagcccaccagctcgccgactt
tcaatcaaaacctttgtgcgacaaagtgatgaaatggtaatccgtgaggcaattttgcgt
gaaattctgcgtggtgggcaggtttattacctgcacaatgatgtggcgaccattgaaaac
tgtgcggaaaaattggcggaacttgtgccagaagctcgcattgtgattggacacggacaa
atgcgtgaacgtgaattggaacgagtgatgagcgatttttatcatcagcgttttaattta
ctggtttgctctactattattgaaacaggaattgacgtgccaactgccaataccattatc
attgaacgagcagataaatttgggctggcacagctgcaccaactgcgtggacgggtgggg
cgttcgcaccaccaagcctacgcctatatgctcacaccacacccgaaaacgctgaccaaa
gacgcccaacaacggttggaagcgatgagtagtattgataatctcggggctggttttgcg
ttggcgacccacgatttagaaattcgtggtgcaggggaattactcggttctgagcagagc
ggacaaattgaatctatcggtttttcgctttatatggatttactagaaaatgcggtcaaa
gccttgcaagaagggcgagagccaagccttgatgaaatcacccaaaatcaagcggagata
gaactgcgtgtccctgcgttaatccctgatgattacctgcctgatgtcaatatgcgttta
tccttctataaacgtatcgcaagcagtgaaaatgaaacccaactaaaagatctcaaaatt
gagctgattgaccgttttggcttattaccagaggctaccaaaaacttattccaaatcact
caattgcgatttattgcccaaaagcttggcttgaaaaaagtggaggctggcattaatggc
ggtttcttagaatttaaaccaacggcaacacctgacccgatgaaattcatcaccttaatt
caaaaacaacctgcggtatatagctttgaaggggcggtaaaattcaagtttagattgcca
ctcgaagaaaataacaagcggttagaatttgtagaaaatttactcagagaaattaatgca
tag
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integrated database retrieval system
