Bibersteinia trehalosi USDA-ARS-USMARC-190: F544_4140
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Entry
F544_4140 CDS
T03019
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
btra
Bibersteinia trehalosi USDA-ARS-USMARC-190
Pathway
btra02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
btra00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F544_4140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
btra03021
]
F544_4140
Transcription machinery [BR:
btra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F544_4140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
AHG85646
UniProt:
W0R4F9
LinkDB
All DBs
Position
412036..413898
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AA seq
620 aa
AA seq
DB search
MEQQSQFEEQESQLEQLIATGREQGYLTISEVHDHLPEELVDADQIEDIIQMINDMGIKV
LETAPDADELMLNGNIADEDVVEEATKVLSTVESELGRTTDPVRMYMREMGTVELLTREG
EIDIAKRIEEGINEVQCAVAEYPEALTELIARYAQVEEGTIRLSDLVTAFVDPNAEEAAP
IDDIEADLADEEAEAPDVEDENEDEDGDSSADSSDDNSIDPELAREKFNALKEQHEKALA
AIQKHGRHKKQARDQIQALSDIFREFRLVPKQFDLLVETMQNMMKQVRAQERQIMRYAVE
YANMKKADFLKAFQGNETSDAWIEKAINAKKGGVPKLADYADNIRNNIVNLQKLEENTGL
TIAQIREIGGRIASGELKARKAKTEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQCLQE
MGREATPEELAEKMGMPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDSTLELPLD
SATAESLRIATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSETLRSFLDD
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacaatctcaatttgaagaacaagaatctcagctagaacagctaattgccaca
gggcgagagcagggctatctgactatctcagaagtgcacgaccatttaccagaagagttg
gtcgatgcggatcaaatcgaagatattatccaaatgatcaacgatatggggatcaaagta
ttagaaacagctcctgatgcagatgaattaatgcttaacggtaatatcgcagatgaagat
gttgtagaagaagcaactaaagtgctttctacggtggaatcagagctaggcagaactaca
gatcctgttcgtatgtatatgcgtgaaatgggtactgttgaactccttacccgtgaaggc
gaaattgatattgcaaaacgcattgaagaagggatcaatgaggttcaatgtgcggttgca
gaatatccagaagcattaaccgaactgattgcacgctatgcacaggttgaagaaggtaca
attcgtctttcagatcttgtgacggcatttgttgatccaaatgcagaagaagccgcgcca
attgatgatattgaagcagatttagcggatgaagaagctgaagcgcctgatgtagaggat
gaaaatgaagacgaagatggcgacagctccgcggattcttcggatgataactctatcgat
cctgagcttgcccgagagaaatttaatgcattaaaagaacaacacgaaaaagcattagcg
gctattcaaaaacatggccgtcataaaaagcaagcaagagaccagattcaagcactatcc
gatattttccgtgagttccgtttagtaccaaaacagttcgatctcttagttgaaacaatg
cagaatatgatgaagcaagtgcgggcacaggaacgtcagattatgcgttatgcagtggaa
tatgcgaatatgaagaaagcggatttcttgaaagcattccaaggcaatgaaacttcagat
gcatggatcgaaaaagcgattaatgcgaaaaaaggtggtgtaccaaaacttgcggattat
gcggataatattcgcaataatattgttaatttacagaagttagaagaaaacacgggatta
acaatcgcacaaattcgtgaaattggtggacgaattgctagtggtgaattaaaagcgcgt
aaagcaaaaaccgaaatggtagaagcaaacttgcgtttagttatctctattgcgaaaaaa
tacactaatcgcggcttacagttcttagatctaatccaagaaggtaacattggtttaatg
aaagcggtggataaattcgaatatcgccgtggttataaattctccacttatgctacatgg
tggattcgccaagcgatcacacgttcaattgctgatcaagcgcgtacgatccgtattcct
gtacatatgatcgaaacgattaataaacttaatcgtatttcacgtcaatgcttacaagag
atgggacgtgaggcaacaccagaagaattagcagaaaaaatgggtatgccagaagataaa
attcgtaaagtgctgaaaattgctaaagaaccgatttctatggaaacgcctgtcggtgat
gacgacgattcacatttaggtgattttattgaagatagcacacttgagttgcctctggat
tctgcaacagcagaaagtttacgtattgcgacgaatgaagtcctagaagggctgactcca
cgagaggcaaaagtcttgcgtatgcgttttggtattgatatgaatacagaccatacatta
gaagaggtcggtaaacagtttgatgtgacccgtgagcgtatccgtcaaattgaggcgaaa
gccttacgtaagctgcgtcatccaagccgttcagaaacattacgtagtttcttagatgat
taa
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