Bibersteinia trehalosi USDA-ARS-USMARC-188: F542_10260
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Entry
F542_10260 CDS
T03017
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
btre
Bibersteinia trehalosi USDA-ARS-USMARC-188
Brite
KEGG Orthology (KO) [BR:
btre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btre03032
]
F542_10260
03400 DNA repair and recombination proteins [BR:
btre03400
]
F542_10260
Enzymes [BR:
btre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
F542_10260
DNA replication proteins [BR:
btre03032
]
Prokaryotic type
DNA Topoisomerases
F542_10260
DNA repair and recombination proteins [BR:
btre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
F542_10260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Toprim_2
Zn_Ribbon_TF
DUF2399
Motif
Other DBs
NCBI-ProteinID:
AHG81744
UniProt:
A0A4V7I9P2
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Position
1085742..1088357
Genome browser
AA seq
871 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSDFVVKSSVGHIRDLPTSGAEKTEKSEKAKPISTKGLS
AEEKAKIKAEKDRNALIKRMGIDPYHDWKANYQILAGKEKVVSELKSLAKKADHIYLATD
LDREGEAIAWHLREVIGGDDSRFSRVVFNEITKNAIKAAFEKPEQLNLDRVNAQQTRRFL
DRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFQPEEFWEIAATAQAQKG
GLNLDLTHFKGKKFSAKNQNEAEQAVKNLQNSAFIVSEIEQKPTSSKAKPPFITSTLQQA
ASTRLGFSVKKTMMLAQRLYEAGYITYMRTDSTNLSQDALAMARSYIEAQFGEKYLPGKP
NFFASKEKAQEAHEAIRPSDVKTKMADLKGMEKDAERLYDLIWRQFLACQMPPAEYDSTS
VTVQAGDYELKTKGRVLRFDGWTKVLPIQGKTAEDQELPVLTLNETLALQAVSPSQHFTK
PPARYSEAALVKELEKRGIGRPSTYAAIISTIQERGYVRVENRRFYAEKMGEIVTDRLNE
SFSDLMNYDFTANMEDTLDQIANGNSNWKEELNRFFADFSEKLTTAELNELEGGMRPNNL
VETDILCPTCNRPMAIRTASTGVFLGCSGYALPPKERCKTTINLIPEAELLNVLDEEAET
NALRQRKRCPKCDTAMDSYVIDPERKIHICGNNPNCDGYVIEQGSFKIKGYDGPVVECDK
CGADMHLKLGRFGKYMGCTACENTRKVLKSGEVAPPKEDPIPFPELKCEKSDAYFVLRDG
ASGVFMSAHNFPKSRESRPAKVAELAQYRERLPEKLRYLANAPTQDPEGNEAVIRFSRKE
KRQYVNSEKNGKATKWIVDYIDGKWVERKKA
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaatcattagtgatcgttgagtcgccagccaaagcgaaaacgattaataagtat
ttaggcagtgatttcgtagtgaaatccagtgtagggcatatccgtgatttgccaacaagc
ggtgcagaaaagacagaaaagagcgagaaagccaagcctatttctacgaaagggctatca
gcggaagaaaaagcaaaaattaaagcagaaaaagatcgcaatgcgttaattaagcgtatg
gggatcgacccctaccatgattggaaggcgaactatcaaattctcgccggtaaagaaaaa
gtcgtctctgaactcaaatcactcgctaaaaaagctgaccatatctatctcgcaaccgac
ttggatagagaaggggaagcaattgcgtggcacttacgcgaggtgattggcggagatgac
agccgtttttctcgagtagtgtttaacgaaattactaaaaatgcgattaaagcggctttt
gaaaagccagaacagttgaatctagaccgagtaaacgcacagcaaacccgccgtttctta
gatcgtgtggtgggttttatggtgtcgccattgctttggaaaaaagtggcacgaggctta
tcagctggtcgtgtacaatcggtagcagtgaaattattagttgagcgggaacgtgaaatt
aaggcattccaacctgaagagttttgggaaatcgccgcaacagcacaagcacaaaaaggc
gggttaaatcttgatttaacgcactttaaaggcaaaaagttctcggcaaaaaatcaaaat
gaagcagagcaagcggttaaaaatctgcaaaattctgcatttattgtcagtgaaattgag
caaaaaccgacttcgtcaaaagccaaaccgccatttattacttcaaccttacaacaagcc
gccagcactcgtttaggtttcagtgtaaagaaaacgatgatgttagctcaacgtctatat
gaagcaggctatatcacttatatgcgtactgatagtacgaatttaagccaagatgcttta
gcaatggcacgcagttacattgaagcacaatttggtgagaaatatctgccaggcaaacca
aatttctttgcaagtaaagagaaagctcaagaagcccacgaagcgattcgtccttctgat
gtaaaaaccaaaatggctgatttaaaaggcatggaaaaagatgctgaacgcctttacgac
ttaatttggcgacaattcctcgcttgtcaaatgcctccagcggaatatgacagtacaagc
gtgactgtgcaagctggcgattatgaattgaagacgaaagggcgagtattacgctttgac
ggctggacaaaagttttacctattcaagggaaaacggctgaagatcaagaattgcctgtt
ttaacattgaatgagacactcgcattacaagcggtgagtccaagccaacattttaccaag
ccaccagctcgttattctgaagccgcattggtaaaagagcttgaaaaaaggggtatcggt
cgcccatcaacctatgctgcgattatttcaaccattcaagagcgtgggtatgtacgtgtg
gaaaaccgccgtttctatgcagaaaaaatgggcgagatcgtcaccgatcgtctaaatgaa
tcttttagcgatttaatgaactacgattttaccgccaatatggaagatacactcgaccaa
attgcgaatggtaatagcaactggaaagaagagcttaaccgcttctttgcagatttttca
gaaaaattaaccaccgcagaactcaatgagttagaaggtggaatgcgtccgaataacttg
gtggaaaccgatattctttgcccaacatgcaaccgcccaatggcaattcgcactgcaagt
acaggggtctttttaggttgctctggctatgcgttaccgcctaaagaacgttgtaaaacg
acgatcaacttaattcccgaagcagaattattgaacgtattagacgaagaagcggaaacc
aatgcacttcgccaacgcaaacgttgcccgaaatgtgatacagcgatggatagctatgtg
attgatccagagcgtaaaattcatatctgtggtaataatccaaactgtgatggttatgtg
attgagcaaggttcctttaaaatcaaaggctatgacggccctgtagtagaatgtgataag
tgtggtgcggatatgcacttaaaactggggcgttttggcaaatatatgggttgtactgct
tgcgagaatacgcgtaaagtgttaaaaagcggtgaagttgcaccaccaaaagaagatcca
attccattcccagagttaaaatgtgaaaaatcagatgcgtattttgtattgcgagatggg
gctagtggggtatttatgtcggcacataatttccctaaatcacgagaaagtcgccctgct
aaagtggcagaattagcccaatatcgagaacgtttacctgaaaaattacgttatttagct
aatgctccaacacaggatcctgaaggtaacgaagccgtgattcgctttagccgtaaagaa
aaacgtcaatacgtgaattcagaaaaaaacggtaaagcaacaaaatggattgtggattat
attgatggaaaatgggtagagcgtaaaaaggcatag
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